| MirGeneDB ID | Spt-Mir-17-P1a |
|---|---|
| Family name | MIR-17 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-17-P1c Spt-Mir-17-P2a Spt-Mir-17-P2c Spt-Mir-17-P4a Spt-Mir-17-P4c |
| Orthologues | Aca-Mir-17-P1a Ami-Mir-17-P1a Bta-Mir-17-P1a Cfa-Mir-17-P1a Cja-Mir-17-P1a Cli-Mir-17-P1a Cmi-Mir-17-P1a Cpi-Mir-17-P1a Cpo-Mir-17-P1a Dno-Mir-17-P1a Dre-Mir-17-P1a1 Dre-Mir-17-P1a2 Eca-Mir-17-P1a Ete-Mir-17-P1a Gga-Mir-17-P1a Gja-Mir-17-P1a Gmo-Mir-17-P1a1 Gmo-Mir-17-P1a2 Hsa-Mir-17-P1a Laf-Mir-17-P1a Lch-Mir-17-P1a Loc-Mir-17-P1a Mal-Mir-17-P1a1 Mal-Mir-17-P1a2 Mdo-Mir-17-P1a Mml-Mir-17-P1a Mmr-Mir-17-P1a Mmu-Mir-17-P1a Mun-Mir-17-P1a Neu-Mir-17-P1a Oan-Mir-17-P1a Ocu-Mir-17-P1a Pab-Mir-17-P1a Pbv-Mir-17-P1a Rno-Mir-17-P1a Sha-Mir-17-P1a Sto-Mir-17-P1a Tgu-Mir-17-P1a Tni-Mir-17-P1a1 Tni-Mir-17-P1a2 Xla-Mir-17-P1a3 Xla-Mir-17-P1a4 Xtr-Mir-17-P1a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01001394.1: 2547642-2547702 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-17-P1a) |
Mir-17-P1a
QEPC01001394.1: 2547642-2547702 [+]
UCSC
Ensembl
Mir-17-P2a QEPC01001394.1: 2547787-2547851 [+] UCSC Ensembl Mir-19-P1a QEPC01001394.1: 2547937-2547994 [+] UCSC Ensembl Mir-17-P4a QEPC01001394.1: 2548101-2548159 [+] UCSC Ensembl Mir-19-P2a QEPC01001394.1: 2548240-2548300 [+] UCSC Ensembl Mir-92-P1a QEPC01001394.1: 2548356-2548416 [+] UCSC Ensembl |
| Seed | AAAGUGC |
| Precursor (pre-Mir +30nt flank) |
AUUGAAGAUCUGCUCAUGUCAGAGUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGGUAUAUGGAACCUACUGCAGUGAAGGCACUUGUAGCAUUAUGUUGACAACUGCCUCAGGAAUCUUUGet precursor sequence |
| Structure | 10 20 30 40 50 AUUGAAGAUCUGCUCAU-- A CA-| A G G UGGUAU GUCAG GUAAUGU AAGUGCUU CA UGCAG UAG \ CAGUU UAUUACG UUCACGGA GU ACGUC AUC A UUUCUAAGGACUCCGUCAA G AUG^ A G - CAAGGU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-17-P1a_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
|
| Star sequence | Spt-Mir-17-P1a_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- ACUGCAGUGAAGGCACUUGUAGC -61
Get sequence
|
