MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-17-1
Paralogues Rno-Mir-17-P1c  Rno-Mir-17-P1d  Rno-Mir-17-P2a  Rno-Mir-17-P2c  Rno-Mir-17-P4a  Rno-Mir-17-P4c  Rno-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pbv-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr15: 100179892-100179951 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1a)
Mir-17-P1a chr15: 100179892-100179951 [+] UCSC Ensembl
Mir-17-P2a chr15: 100180031-100180095 [+] UCSC Ensembl
Mir-19-P1a chr15: 100180175-100180232 [+] UCSC Ensembl
Mir-17-P4a chr15: 100180349-100180407 [+] UCSC Ensembl
Mir-19-P2a chr15: 100180479-100180539 [+] UCSC Ensembl
Mir-92-P1a chr15: 100180596-100180654 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCGGCUGACCGACCGGUCAGGAUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGGUGUGUGCAUCUACUGCAGUGAAGGCACUUGUGGCAUUGUGCUGACAGCUGCCUCGAGAGGGGCU
Get precursor sequence
Structure
        10          20        30         40        50         
GGCCGGCUGACCGACCG--     G         -|       A  G     G   UGGUG 
                   GUCAG AUAAUGUCA AAGUGCUU CA UGCAG UAG     U
                   CAGUC UGUUACGGU UUCACGGA GU ACGUC AUC     G
UCGGGGAGAGCUCCGUCGA     G         G^       A  G     -   UACGU 
.       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-17-P1a_5p

mirBase accessionMIMAT0000786
Sequence
0- CAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
Proposed targets microrna.org: MIMAT0000786
TargetScanVert: rno-miR-17-5p
miRDB: MIMAT0000786
Star sequence

Rno-Mir-17-P1a_3p*

mirBase accessionMIMAT0004710
Sequence
37- ACUGCAGUGAAGGCACUUGUGGC -60
Get sequence
Proposed targets microrna.org: MIMAT0004710
TargetScanVert: rno-miR-17-1-3p
miRDB: MIMAT0004710