MirGeneDB 3.0

MirGeneDB ID

Xla-Mir-17-P1a3

Family name MIR-17 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-17-2
Paralogues Xla-Mir-17-P1a4  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cja-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Eca-Mir-17-P1a  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Hsa-Mir-17-P1a  Laf-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmr-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Neu-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pab-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Xtr-Mir-17-P1a 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030726.1: 122721820-122721881 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1a3)
Mir-92-P1a3 NC_030726.1: 122721137-122721196 [-] UCSC Ensembl
Mir-19-P2a3 NC_030726.1: 122721259-122721320 [-] UCSC Ensembl
Mir-17-P4a3 NC_030726.1: 122721387-122721447 [-] UCSC Ensembl
Mir-19-P1a3 NC_030726.1: 122721555-122721612 [-] UCSC Ensembl
Mir-17-P2a3 NC_030726.1: 122721687-122721751 [-] UCSC Ensembl
Mir-17-P1a3 NC_030726.1: 122721820-122721881 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)
GCUGGGACCAGCGGUUGUCAAGAGUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUUUAACAGAACCUACUGCAGUGAAGGCACUUGUAGCAUUAUGUUGACAGUGUUUGCUAGAGGCUAA
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Structure
        10           20        30         40        50        60
GCUGGGACCAGCGGUUG---|   GA       CA-        A  G     G   UGAUUU 
                    UCAA  GUAAUGU   AAGUGCUU CA UGCAG UAG      A
                    AGUU  UAUUACG   UUCACGGA GU ACGUC AUC      A
AAUCGGAGAUCGUUUGUGAC^   G-       AUG        A  G     -   CAAGAC 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-17-P1a3_5p

mirBase accessionMIMAT0046482
Sequence
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Xla-Mir-17-P1a3_3p*

mirBase accessionMIMAT0046484
Sequence
39- ACUGCAGUGAAGGCACUUGUAGC -62
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