MirGeneDB 2.1

MirGeneDB ID

Cli-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-17
Paralogues Cli-Mir-17-P1c  Cli-Mir-17-P2a  Cli-Mir-17-P2c  Cli-Mir-17-P4a  Cli-Mir-17-P4c 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold183: 2837971-2838031 [-]
Clustered miRNAs
(< 50kb from Mir-17-P1a)
Mir-92-P1a scaffold183: 2837255-2837313 [-]
Mir-19-P2a scaffold183: 2837370-2837430 [-]
Mir-17-P4a scaffold183: 2837507-2837565 [-]
Mir-19-P1a scaffold183: 2837681-2837738 [-]
Mir-17-P2a scaffold183: 2837820-2837884 [-]
Mir-17-P1a scaffold183: 2837971-2838031 [-]
Precursor
(pre-Mir +30nt flank)
CUAAAAACGCUGGUUGCGUCAGAGUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUAUAUAGAACCUACUGCAGUGAAGGCACUUGUAGCAUUAUGUUGACAGCUGCCUCAGGAGAUCUU
Get precursor sequence
Structure
        10          20        30         40        50          
CUAAAAACGCUGGUUGC--     A       CA-|       A  G     G   UGAUAU 
                   GUCAG GUAAUGU   AAGUGCUU CA UGCAG UAG      \
                   CAGUU UAUUACG   UUCACGGA GU ACGUC AUC      A
UUCUAGAGGACUCCGUCGA     G       AUG^       A  G     -   CAAGAU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cl Cl Cl Cl Cl To
Mature sequence

Cli-Mir-17-P1a_5p

mirBase accessionMIMAT0038421
Sequence
0- CAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
Star sequence

Cli-Mir-17-P1a_3p*

mirBase accessionMIMAT0038422
Sequence
38- ACUGCAGUGAAGGCACUUGUAGC -61
Get sequence