Mir-17-P1a2

MirGeneDB ID

Dre-Mir-17-P1a2

Family name

MIR-17 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-17a-2

Paralogues

Dre-Mir-17-P1a1 Dre-Mir-17-P2a1 Dre-Mir-17-P2a2 Dre-Mir-17-P2c Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Dre-Mir-17-P4c Dre-Mir-17-P4d

Orthologues

Aca-Mir-17-P1a Ami-Mir-17-P1a Bta-Mir-17-P1a Cfa-Mir-17-P1a Cja-Mir-17-P1a Cli-Mir-17-P1a Cmi-Mir-17-P1a Cpi-Mir-17-P1a Cpo-Mir-17-P1a Dno-Mir-17-P1a Eca-Mir-17-P1a Ete-Mir-17-P1a Gga-Mir-17-P1a Gja-Mir-17-P1a Gmo-Mir-17-P1a2 Hsa-Mir-17-P1a Laf-Mir-17-P1a Lch-Mir-17-P1a Loc-Mir-17-P1a Mal-Mir-17-P1a2 Mdo-Mir-17-P1a Mml-Mir-17-P1a Mmr-Mir-17-P1a Mmu-Mir-17-P1a Mun-Mir-17-P1a Neu-Mir-17-P1a Oan-Mir-17-P1a Ocu-Mir-17-P1a Pab-Mir-17-P1a Pbv-Mir-17-P1a Rno-Mir-17-P1a Sha-Mir-17-P1a Spt-Mir-17-P1a Sto-Mir-17-P1a Tgu-Mir-17-P1a Tni-Mir-17-P1a2 Xtr-Mir-17-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr9: 53436955-53437013 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1a2)

Mir-92-P1a2 chr9: 53436299-53436355 [-] UCSC Ensembl
Mir-19-P2a2 chr9: 53436416-53436475 [-] UCSC Ensembl
Mir-17-P4a2 chr9: 53436542-53436606 [-] UCSC Ensembl
Mir-19-P1a2 chr9: 53436701-53436758 [-] UCSC Ensembl
Mir-17-P2a2 chr9: 53436841-53436905 [-] UCSC Ensembl
Mir-17-P1a2 chr9: 53436955-53437013 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GACCUGUCCCACGUCAUGUCACUGUAGUGUCAAAGUGCUUACAGUGCAGGUAGUUCAAUAUAAUCUACUGCAGUGGAGGCACUUCAAGCUUUACCGUGACGCAAAAACUCGAGCGCAAC

Get precursor sequence

Structure

        10          20        30         40        50         
GACCUGUCCCACGUCAU--     U    U  CA-|       A  G     G   UUCAA 
                   GUCAC GUAG GU   AAGUGCUU CA UGCAG UAG     \
                   CAGUG CAUU CG   UUCACGGA GU ACGUC AUC     U
CAACGCGAGCUCAAAAACG     C    U  AAC^       G  G     -   UAAUA 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-17-P1a2_5p

mirBase accession

MIMAT0001777

Sequence

0- CAAAGUGCUUACAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-17a

Star sequence

Dre-Mir-17-P1a2_3p*

mirBase accession

MIMAT0031938

Sequence

36- ACUGCAGUGGAGGCACUUCAAGC -59

Get sequence