MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-17-P2a2

Family name MIR-17 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-18b
Paralogues Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Dre-Mir-17-P2a1  Dre-Mir-17-P2c  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Dre-Mir-17-P4c  Dre-Mir-17-P4d 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cja-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Eca-Mir-17-P2a  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Gmo-Mir-17-P2a2  Hsa-Mir-17-P2a  Laf-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmr-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Neu-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pab-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Tni-Mir-17-P2a2  Xtr-Mir-17-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr9: 53436841-53436905 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2a2)		 Mir-92-P1a2 chr9: 53436299-53436355 [-] UCSC Ensembl
Mir-19-P2a2 chr9: 53436416-53436475 [-] UCSC Ensembl
Mir-17-P4a2 chr9: 53436542-53436606 [-] UCSC Ensembl
Mir-19-P1a2 chr9: 53436701-53436758 [-] UCSC Ensembl
Mir-17-P2a2 chr9: 53436841-53436905 [-] UCSC Ensembl
Mir-17-P1a2 chr9: 53436955-53437013 [-] UCSC Ensembl
Seed AAGGUGC
Precursor
(pre-Mir +30nt flank)		 
UCGAGCGCAACCAUGAUCUACUGCUUAUGCUAAGGUGCAUUUAGUGCAGAUAGUGAAAUAGACUAGCACCUACUGCCCUAAGUGCCCCUUCUGGCAUAAGGGGCUGGCAAAACCCUCCCCGCUGC
Get precursor sequence
Structure
        10         20         30          40        50        60 
UCGAGCGCAACCAUGAU-   -  G         --|  U        U    A   UGAAAUA 
                  CUA CU CUUAUGCUA  AGG GCAUUUAG GCAG UAG       G
                  GGU GG GAAUACGGU  UCC CGUGAAUC CGUC AUC       A
CGUCGCCCCUCCCAAAAC   C  G         CU^  C        C    -   CACGAUC 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-17-P2a2_5p
mirBase accessionMIMAT0001780
Sequence 
0- UAAGGUGCAUUUAGUGCAGAUAG -23
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Proposed targets TargetScanFish: dre-miR-18b
Star sequence

Dre-Mir-17-P2a2_3p*
mirBase accessionMIMAT0003397
Sequence 
41- ACUGCCCUAAGUGCCCCUUCUGGC -65
Get sequence