Mir-92-P1a2

MirGeneDB ID

Dre-Mir-92-P1a2

Family name

MIR-92 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-92a-2

Paralogues

Dre-Mir-92-P1a1 Dre-Mir-92-P1d Dre-Mir-92-P2c Dre-Mir-92-P2d

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a2 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a2 Xtr-Mir-92-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr9: 53436299-53436355 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1a2)

Mir-92-P1a2 chr9: 53436299-53436355 [-] UCSC Ensembl
Mir-19-P2a2 chr9: 53436416-53436475 [-] UCSC Ensembl
Mir-17-P4a2 chr9: 53436542-53436606 [-] UCSC Ensembl
Mir-19-P1a2 chr9: 53436701-53436758 [-] UCSC Ensembl
Mir-17-P2a2 chr9: 53436841-53436905 [-] UCSC Ensembl
Mir-17-P1a2 chr9: 53436955-53437013 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

CCCGUCAGAUCACAGCAUCCCUUUCUUUGCAGGUUGGGAUCGGCCGCAAUGCUCUGUGCUGGAAGUAUUGCACUUGUCCCGGCCUGUGAAGAGCAUGGGAAAUUGUUCGGCUGCUUU

Get precursor sequence

Structure

        10        20          30        40        50        
CCCGUCAGAUCACAGCAU   U--|    UG           C  CC        CUGU 
                  CCC   UUCUU  CAGGUUGGGAU GG  GCAAUGCU    G
                  GGG   GAGAA  GUCCGGCCCUG UC  CGUUAUGA    C
UUUCGUCGGCUUGUUAAA   UAC^    GU           U  A-        AGGU 
     110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-92-P1a2_5p*

mirBase accession

MIMAT0031954

Sequence

0- AGGUUGGGAUCGGCCGCAAUGCU -23

Get sequence

Mature sequence

Dre-Mir-92-P1a2_3p

mirBase accession

MIMAT0001808

Sequence

35- UAUUGCACUUGUCCCGGCCUGU -57

Get sequence

Proposed targets

TargetScanFish: dre-miR-92a