MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-92-P2d

Family name MIR-92 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-25
Paralogues Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Dre-Mir-92-P1d  Dre-Mir-92-P2c 
Orthologues Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2d  Cel-Mir-92  Cfa-Mir-92-P2d  Cja-Mir-92-P2d  Cmi-Mir-92-P2d  Cpo-Mir-92-P2d  Dno-Mir-92-P2d  Eca-Mir-92-P2d  Esc-Mir-92  Ete-Mir-92-P2d  Gmo-Mir-92-P2d  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2d  Isc-Mir-92  Laf-Mir-92-P2d  Lch-Mir-92-P2d  Loc-Mir-92-P2d  Mal-Mir-92-P2d  Mdo-Mir-92-P2d  Mml-Mir-92-P2d  Mmr-Mir-92-P2d  Mmu-Mir-92-P2d  Oan-Mir-92-P2d  Obi-Mir-92  Ocu-Mir-92-P2d  Pab-Mir-92-P2d  Rno-Mir-92-P2d  Sha-Mir-92-P2d  Sme-Mir-92  Tni-Mir-92-P2d  Xla-Mir-92-P2d3  Xla-Mir-92-P2d4  Xtr-Mir-92-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr14: 100779-100838 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2d)		 Mir-17-P4d chr14: 100511-100568 [+] UCSC Ensembl
Mir-19-P2d chr14: 100674-100734 [+] UCSC Ensembl
Mir-92-P2d chr14: 100779-100838 [+] UCSC Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
UACACUGAUGCUACGCUAGCCGGCGCUGAGAGGCGGAGACUUGGGCAGCUGCCGUCAUUCCCAGAAGGCAUUGCACUUGUCUCGGUCUGACAGUGGCGGCACAACCCCUCCAUUCACCAG
Get precursor sequence
Structure
        10          20        30        40         50          
UACACUGAUGCUACGCUA--|   G     AG    G     UU  -    C    GUCAUU 
                    GCCG CGCUG  AGGC GAGAC  GG GCAG UGCC      \
                    CGGC GUGAC  UCUG CUCUG  UC CGUU ACGG      C
GACCACUUACCUCCCCAACA^   G     AG    G     U-  A    -    AAGACC 
.       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-92-P2d_5p*
mirBase accessionMIMAT0031946
Sequence 
0- AGGCGGAGACUUGGGCAGCUGCC -23
Get sequence
Mature sequence

Dre-Mir-92-P2d_3p
mirBase accessionMIMAT0001793
Sequence 
38- CAUUGCACUUGUCUCGGUCUGA -60
Get sequence
Proposed targets TargetScanFish: dre-miR-25