MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-92-P2d

Family name MIR-92 (all species)
Seed AUUGCAC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-25
Paralogues Cpo-Mir-92-P1a  Cpo-Mir-92-P1c  Cpo-Mir-92-P1d  Cpo-Mir-92-P2a  Cpo-Mir-92-P2c 
Orthologues Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2d  Cel-Mir-92  Cfa-Mir-92-P2d  Cmi-Mir-92-P2d  Dno-Mir-92-P2d  Dre-Mir-92-P2d  Esc-Mir-92  Ete-Mir-92-P2d  Gmo-Mir-92-P2d  Hsa-Mir-92-P2d  Isc-Mir-92  Lch-Mir-92-P2d  Loc-Mir-92-P2d  Mal-Mir-92-P2d  Mdo-Mir-92-P2d  Mml-Mir-92-P2d  Mmu-Mir-92-P2d  Oan-Mir-92-P2d  Obi-Mir-92  Ocu-Mir-92-P2d  Rno-Mir-92-P2d  Sha-Mir-92-P2d  Sme-Mir-92  Tni-Mir-92-P2d  Xla-Mir-92-P2d3  Xla-Mir-92-P2d4  Xtr-Mir-92-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(cavPor3)		 scaffold_30: 4036356-4036415 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-92-P2d)		 Mir-17-P1d scaffold_30: 4035937-4035998 [+] UCSC
Mir-17-P4d scaffold_30: 4036154-4036215 [+] UCSC
Mir-92-P2d scaffold_30: 4036356-4036415 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGCUGAACACCGGGACUGGCCAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGACGCUGCCCUGGGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCCCUUCACUACGGAUGGGGGU
Get precursor sequence
Structure
        10          20        30        40         50          
AGCUGAACACCGGGACU--|   A UG   AG    G     UU  -     U   GGACGC 
                   GGCC G  UUG  AGGC GAGAC  GG GCAAU GCU      \
                   CCGG C  GAC  UCUG CUCUG  UC CGUUA CGG      U
UGGGGGUAGGCAUCACUUC^   C GU   AG    G     U-  A     -   GUCCCG 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cpo-Mir-92-P2d_5p*
mirBase accessionMIMAT0046883
Sequence 
0- AGGCGGAGACUUGGGCAAUUGCU -23
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Mature sequence

Cpo-Mir-92-P2d_3p
mirBase accessionMIMAT0046884
Sequence 
38- CAUUGCACUUGUCUCGGUCUGA -60
Get sequence