MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-92-P2d

Family name MIR-92 (all species)
Seed AUUGCAC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-25-1
Paralogues Xtr-Mir-92-P1a  Xtr-Mir-92-P1c  Xtr-Mir-92-P1d  Xtr-Mir-92-P2a  Xtr-Mir-92-P2c 
Orthologues Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2d  Cel-Mir-92  Cfa-Mir-92-P2d  Cmi-Mir-92-P2d  Cpo-Mir-92-P2d  Dno-Mir-92-P2d  Dre-Mir-92-P2d  Esc-Mir-92  Ete-Mir-92-P2d  Gmo-Mir-92-P2d  Hsa-Mir-92-P2d  Isc-Mir-92  Lch-Mir-92-P2d  Loc-Mir-92-P2d  Mal-Mir-92-P2d  Mdo-Mir-92-P2d  Mml-Mir-92-P2d  Mmu-Mir-92-P2d  Oan-Mir-92-P2d  Obi-Mir-92  Ocu-Mir-92-P2d  Rno-Mir-92-P2d  Sha-Mir-92-P2d  Sme-Mir-92  Tni-Mir-92-P2d  Xla-Mir-92-P2d3  Xla-Mir-92-P2d4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chrUn_NW_016683390v1: 107010-107067 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2d)		 Mir-92-P2d chrUn_NW_016683390v1: 107010-107067 [-] UCSC Ensembl
Mir-17-P4d chrUn_NW_016683390v1: 107136-107196 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCAGGCUGCAGAACAGCUGGUGUUGACAGGCAGAGACAGGAGCAACUGCUGGUGUGCCUUGGUAGCAUUGCACUUGUCUCGGUCUGACAGUGUCGGCAAAACCCUCCAAUGUCUUU
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Structure
        10          20        30        40        50         
UUUCAGGCUGCAGAACA--|    UG   A     A        A    C   UGGUGUG 
                   GCUGG  UUG CAGGC GAGACAGG GCAA UGC       \
                   CGGCU  GAC GUCUG CUCUGUUC CGUU ACG       C
UUUCUGUAACCUCCCAAAA^    GU   A     G        A    -   AUGGUUC 
      110       100        90        80        70         60
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Em Em Em Em He
Star sequence

Xtr-Mir-92-P2d_5p*
mirBase accessionNone
Sequence 
0- GGCAGAGACAGGAGCAACUGC -21
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Mature sequence

Xtr-Mir-92-P2d_3p
mirBase accessionMIMAT0003674
Sequence 
37- CAUUGCACUUGUCUCGGUCUG -58
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Proposed targets TargetScanVert: xtr-miR-25