MirGeneDB ID | Lch-Mir-92-P2d |
---|---|
Family name | MIR-92 (all species) |
Seed | AUUGCAC |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-92-P1a Lch-Mir-92-P1d Lch-Mir-92-P2c |
Orthologues | Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2d Cel-Mir-92 Cfa-Mir-92-P2d Cmi-Mir-92-P2d Cpo-Mir-92-P2d Dno-Mir-92-P2d Dre-Mir-92-P2d Esc-Mir-92 Ete-Mir-92-P2d Gmo-Mir-92-P2d Hsa-Mir-92-P2d Isc-Mir-92 Loc-Mir-92-P2d Mal-Mir-92-P2d Mdo-Mir-92-P2d Mml-Mir-92-P2d Mmu-Mir-92-P2d Oan-Mir-92-P2d Obi-Mir-92 Ocu-Mir-92-P2d Rno-Mir-92-P2d Sha-Mir-92-P2d Sme-Mir-92 Tni-Mir-92-P2d Xla-Mir-92-P2d3 Xla-Mir-92-P2d4 Xtr-Mir-92-P2d |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (LatCha1_add) |
JH128754.1: 158754-158813 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | UGAUCCGGGGCCCGACUGGCUAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGCAAUCCCAGAGGGCAUUGCACUUGUCUCGGUCUGACAGUGCUGGCACAACACGACAGAGAUCCAGGet precursor sequence |
Structure | 10 20 30 40 50 UGAUCCGGGGCCCGACUG--| UG AG G UU - U GGCAAU GCUAG UUG AGGC GAGAC GG GCAAU GCU \ CGGUC GAC UCUG CUCUG UC CGUUA CGG C GACCUAGAGACAGCACAACA^ GU AG G U- A - GAGACC . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Lch-Mir-92-P2d_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGCGGAGACUUGGGCAAUUGCU -23
Get sequence
|
Mature sequence | Lch-Mir-92-P2d_3p (predicted) |
mirBase accession | None |
Sequence |
38- CAUUGCACUUGUCUCGGUCUGA -60
Get sequence
|