| MirGeneDB ID | Lch-Mir-92-P2d |
|---|---|
| Family name | MIR-92 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-92-P1a Lch-Mir-92-P1d Lch-Mir-92-P2c |
| Orthologues | Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2d Cel-Mir-92 Cfa-Mir-92-P2d Cja-Mir-92-P2d Cmi-Mir-92-P2d Cpo-Mir-92-P2d Dno-Mir-92-P2d Dre-Mir-92-P2d Eca-Mir-92-P2d Esc-Mir-92 Ete-Mir-92-P2d Gmo-Mir-92-P2d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2d Isc-Mir-92 Laf-Mir-92-P2d Loc-Mir-92-P2d Mal-Mir-92-P2d Mdo-Mir-92-P2d Mml-Mir-92-P2d Mmr-Mir-92-P2d Mmu-Mir-92-P2d Oan-Mir-92-P2d Obi-Mir-92 Ocu-Mir-92-P2d Pab-Mir-92-P2d Rno-Mir-92-P2d Sha-Mir-92-P2d Sme-Mir-92 Tni-Mir-92-P2d Xla-Mir-92-P2d3 Xla-Mir-92-P2d4 Xtr-Mir-92-P2d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
JH128754.1: 158754-158813 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-92-P2d) |
Mir-17-P1d
JH128754.1: 148690-148752 [+]
Ensembl
Mir-17-P4d JH128754.1: 150663-150723 [+] Ensembl Mir-19-P2d JH128754.1: 155359-155420 [+] Ensembl Mir-92-P2d JH128754.1: 158754-158813 [+] Ensembl |
| Seed | AUUGCAC |
| Precursor (pre-Mir +30nt flank) |
UGAUCCGGGGCCCGACUGGCUAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGCAAUCCCAGAGGGCAUUGCACUUGUCUCGGUCUGACAGUGCUGGCACAACACGACAGAGAUCCAGGet precursor sequence |
| Structure | 10 20 30 40 50 UGAUCCGGGGCCCGACUG--| UG AG G UU - U GGCAAU GCUAG UUG AGGC GAGAC GG GCAAU GCU \ CGGUC GAC UCUG CUCUG UC CGUUA CGG C GACCUAGAGACAGCACAACA^ GU AG G U- A - GAGACC . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Lch-Mir-92-P2d_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGCGGAGACUUGGGCAAUUGCU -23
Get sequence
|
| Mature sequence | Lch-Mir-92-P2d_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- CAUUGCACUUGUCUCGGUCUGA -60
Get sequence
|
