Mir-92-o2

MirGeneDB ID

Bfl-Mir-92-o2

Family name

MIR-92 (all species)

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

bfl-mir-92a-1

Paralogues

Bfl-Mir-92-o1 Bfl-Mir-92-o3 Bfl-Mir-92-o4 Bfl-Mir-92-o5 Bfl-Mir-92-o6 Bfl-Mir-92-o7 Bfl-Mir-92-o8

Orthologues

Aca-Mir-92-P2a Aca-Mir-92-P2c Ami-Mir-92-P2a Ami-Mir-92-P2c Asu-Mir-92 Bla-Mir-92-o2 Bta-Mir-92-P2a Bta-Mir-92-P2c Bta-Mir-92-P2d Cel-Mir-92 Cfa-Mir-92-P2a Cfa-Mir-92-P2c Cfa-Mir-92-P2d Cja-Mir-92-P2a Cja-Mir-92-P2c Cja-Mir-92-P2d Cli-Mir-92-P2a Cli-Mir-92-P2c Cmi-Mir-92-P2a Cmi-Mir-92-P2b Cmi-Mir-92-P2c Cmi-Mir-92-P2d Cpi-Mir-92-P2a Cpi-Mir-92-P2c Cpo-Mir-92-P2a Cpo-Mir-92-P2c Cpo-Mir-92-P2d Dno-Mir-92-P2a Dno-Mir-92-P2c Dno-Mir-92-P2d Dre-Mir-92-P2c Dre-Mir-92-P2d Ebu-Mir-92-P2e Ebu-Mir-92-P2f Eca-Mir-92-P2a Eca-Mir-92-P2c Eca-Mir-92-P2d Esc-Mir-92 Ete-Mir-92-P2a Ete-Mir-92-P2c Ete-Mir-92-P2d Gga-Mir-92-P2a Gga-Mir-92-P2c Gja-Mir-92-P2a Gja-Mir-92-P2c Gmo-Mir-92-P2c Gmo-Mir-92-P2d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2a Hsa-Mir-92-P2c Hsa-Mir-92-P2d Isc-Mir-92 Laf-Mir-92-P2a Laf-Mir-92-P2c Laf-Mir-92-P2d Lch-Mir-92-P2c Lch-Mir-92-P2d Loc-Mir-92-P2c Loc-Mir-92-P2d Mal-Mir-92-P2d Mdo-Mir-92-P2a Mdo-Mir-92-P2c Mdo-Mir-92-P2d Mml-Mir-92-P2a Mml-Mir-92-P2c Mml-Mir-92-P2d Mmr-Mir-92-P2a Mmr-Mir-92-P2c Mmr-Mir-92-P2d Mmu-Mir-92-P2a Mmu-Mir-92-P2c Mmu-Mir-92-P2d Mun-Mir-92-P2a Mun-Mir-92-P2c Neu-Mir-92-P2a Neu-Mir-92-P2c Oan-Mir-92-P2a Oan-Mir-92-P2c Oan-Mir-92-P2d Obi-Mir-92 Ocu-Mir-92-P2a Ocu-Mir-92-P2c Ocu-Mir-92-P2d Pab-Mir-92-P2a Pab-Mir-92-P2c Pab-Mir-92-P2d Pbv-Mir-92-P2c Pma-Mir-92-P2g Rno-Mir-92-P2a Rno-Mir-92-P2c Rno-Mir-92-P2d Sha-Mir-92-P2a Sha-Mir-92-P2c Sha-Mir-92-P2d Sme-Mir-92 Spt-Mir-92-P2a Spt-Mir-92-P2c Sto-Mir-92-P2a Sto-Mir-92-P2b Sto-Mir-92-P2c Tgu-Mir-92-P2a Tgu-Mir-92-P2c Tni-Mir-92-P2d Xla-Mir-92-P2a Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xla-Mir-92-P2d3 Xla-Mir-92-P2d4 Xtr-Mir-92-P2a Xtr-Mir-92-P2c Xtr-Mir-92-P2d

Node of Origin (locus)

Branchiostoma

Node of Origin (family)

Bilateria

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049981.1: 15365141-15365198 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-92-o2)

Mir-92-o1 NC_049981.1: 15364646-15364704 [+] UCSC
Mir-92-o2 NC_049981.1: 15365141-15365198 [+] UCSC

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

UACUUCCCAAAGAACAUUGCCCUGACAAGAAGGUCGUGAUAGGUGGCAAUGUUGUACCCACACAAAUAUUGCACUUGUCCCGGCCUUUUUGCUUUGGCUUAAAGCAACAGUGAUAUAG

Get precursor sequence

Structure

        10          20        30        40        50         
UACUUCCCAAAGAACAUU--|  CUGA           U        G       GUACC 
                    GCC    CAAGAAGGUCG GAUAGGUG CAAUGUU     \
                    CGG    GUUUUUCCGGC CUGUUCAC GUUAUAA     C
GAUAUAGUGACAACGAAAUU^  UUUC           C        -       ACACA 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Bfl-Mir-92-o2_5p*

mirBase accession

None

Sequence

0- AGGUCGUGAUAGGUGGCAAUGUU -23

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Mature sequence

Bfl-Mir-92-o2_3p

mirBase accession

MIMAT0009478

Sequence

36- UAUUGCACUUGUCCCGGCCUUU -58

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