MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-92-o6

Family name MIR-92 (all species)
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-92d
Paralogues Bfl-Mir-92-o1  Bfl-Mir-92-o2  Bfl-Mir-92-o3  Bfl-Mir-92-o4  Bfl-Mir-92-o5  Bfl-Mir-92-o7  Bfl-Mir-92-o8 
Orthologues Asu-Mir-92  Bla-Mir-92-o6  Cel-Mir-92  Dan-Mir-92-P6  Dme-Mir-92-P6  Dmo-Mir-92-P6  Dsi-Mir-92-P6  Dya-Mir-92-P6a  Dya-Mir-92-P6b  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049979.1: 12400557-12400617 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-92-o6)		 Mir-92-o6 NC_049979.1: 12400557-12400617 [-] UCSC
Mir-92-o5 NC_049979.1: 12400671-12400726 [-] UCSC
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
UUCUAACGCAGCCCUUUCUGUGUGAUUGAUAGGUCAGGAUUGAGUGUUAUGCUGUGAACUUGCUGUCAGUAUUGCACUUAUCCUGGCCUGUCAAUUAUGGCAGCUUCUCACCAGGGUGCAG
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Structure
        10         20         30        40        50        60
UUCUAACGCAGCCCUUU-   -|                   U      U     GUGAAC 
                  CUG UGUGAUUGAUAGGUCAGGAU GAGUGU AUGCU      U
                  GAC GUAUUAACUGUCCGGUCCUA UUCACG UAUGA      U
GACGUGGGACCACUCUUC   G^                   -      U     CUGUCG 
 .       110       100        90        80         70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Bfl-Mir-92-o6_5p*
mirBase accessionMIMAT0020079
Sequence 
0- AGGUCAGGAUUGAGUGUUAUGCU -23
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Mature sequence

Bfl-Mir-92-o6_3p
mirBase accessionNone
Sequence 
39- UAUUGCACUUAUCCUGGCCUGU -61
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