MirGeneDB 2.1
MirGeneDB ID

Bfl-Mir-92-o3

Family name MIR-92 (all species)
Seed AUUGCAC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-92c
Paralogues Bfl-Mir-92-o1  Bfl-Mir-92-o2  Bfl-Mir-92-o4  Bfl-Mir-92-o5  Bfl-Mir-92-o6  Bfl-Mir-92-o7  Bfl-Mir-92-o8 
Orthologues Asu-Mir-92  Bla-Mir-92-o3  Cel-Mir-92  Dan-Mir-92-P3  Dme-Mir-92-P3  Dmo-Mir-92-P3  Dsi-Mir-92-P3  Dya-Mir-92-P3  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049981.1: 13639020-13639073 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-92-o3)		 Mir-92-o3 NC_049981.1: 13639020-13639073 [+] UCSC
Mir-92-o4 NC_049981.1: 13639441-13639502 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UAAAAUUUAGCGGUUUUGUUUUUGGCGGGAAGGUCGGGAGAAGAAACAAUGUUUCCAACCGAUAUUGCACUUGUCCCGGCUUGCCUGCUGCCGCCAUCUUGCUCCAGACAUGAC
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Structure
        10        20          30        40        50       
UAAAAUUUAGCGGUUUUGUUUUU--|     A         G   AAA       UCC 
                         GGCGGG AGGUCGGGA AAG   CAAUGUU   \
                         UCGUCC UUCGGCCCU UUC   GUUAUAG   A
CAGUACAGACCUCGUUCUACCGCCG^     G         G   AC-       CCA 
  110       100        90        80        70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Bfl-Mir-92-o3_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUCGGGAGAAGAAACAAUGUU -23
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Mature sequence

Bfl-Mir-92-o3_3p
mirBase accessionMIMAT0010010
Sequence 
32- UAUUGCACUUGUCCCGGCUUGC -54
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