MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-92-o5

Family name MIR-92 (all species)
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID
Paralogues Bfl-Mir-92-o1  Bfl-Mir-92-o2  Bfl-Mir-92-o3  Bfl-Mir-92-o4  Bfl-Mir-92-o6  Bfl-Mir-92-o7  Bfl-Mir-92-o8 
Orthologues Asu-Mir-92  Bla-Mir-92-o5  Cel-Mir-92  Dan-Mir-92-P5  Dme-Mir-92-P5  Dmo-Mir-92-P5  Dsi-Mir-92-P5  Dya-Mir-92-P5  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049979.1: 12400671-12400726 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-92-o5)		 Mir-92-o6 NC_049979.1: 12400557-12400617 [-] UCSC
Mir-92-o5 NC_049979.1: 12400671-12400726 [-] UCSC
Seed AUUGCUC
Precursor
(pre-Mir +30nt flank)		 
AGUAUCCUAGCUAUGGUAUAUUUGACUGGUAGGCUGGGAUAAGUUGCAGUACUCUGUAGCCAGUAUUGCUCUUGUUUUGGUCCUGUUGGCUCUGGCAAAUUCUCUGCAGUUCUAAC
Get precursor sequence
Structure
        10        20          30         40        50       
AGUAUCCUAGCUAUGGUAUAUUU-  -  GG    -|UG       UU        CUG 
                        GA CU  UAGG C  GGAUAAG  GCAGUACU   U
                        CU GG  GUCC G  UUUGUUC  CGUUAUGA   A
CAAUCUUGACGUCUCUUAAACGGU  C  UU    U^GU       U-        CCG 
    110       100        90        80        70         60
Deep sequencing
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Bfl-Mir-92-o5_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGCUGGGAUAAGUUGCAGUACU -23
Get sequence
Mature sequence

Bfl-Mir-92-o5_3p (predicted)
mirBase accessionNone
Sequence 
33- UAUUGCUCUUGUUUUGGUCCUGU -56
Get sequence