Mir-92-o8

MirGeneDB ID

Bfl-Mir-92-o8

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

bfl-mir-2063

Paralogues

Bfl-Mir-92-o1 Bfl-Mir-92-o2 Bfl-Mir-92-o3 Bfl-Mir-92-o4 Bfl-Mir-92-o5 Bfl-Mir-92-o6 Bfl-Mir-92-o7

Orthologues

Asu-Mir-92 Bla-Mir-92-o8 Cel-Mir-92 Dan-Mir-92-P8 Dme-Mir-92-P8 Dmo-Mir-92-P8 Dsi-Mir-92-P8 Esc-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

Branchiostoma

Node of Origin (family)

Bilateria

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049986.1: 9122708-9122772 [+] UCSC

Precursor
(pre-Mir +30nt flank)

CCGGUAUUCUGGAAUUUGAGGCUCACUUUCAAAAAGCAAAAAGUUGCAAUAUCGGUAUACGACGUUACGUAGAUAUUGCACUAAUUUGCUUUUGAAAGUGGUACCUACCAUUCAUCCAUCUCUUU

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Structure

        10         20         30        40         50        60  
CCGGUAUUCUGGAAUUUG-   C-|           A     A-   U        GGUAUACG 
                   AGG  UCACUUUCAAAA GCAAA  AGU GCAAUAUC        A
                   UCC  GGUGAAAGUUUU CGUUU  UCA CGUUAUAG        C
UUUCUCUACCUACUUACCA   AU^           -     AA   -        AUGCAUUG 
   120       110       100        90         80         70

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Bfl-Mir-92-o8_5p* (predicted)

mirBase accession

None

Sequence

0- AAAAAGCAAAAAGUUGCAAUAUC -23

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Mature sequence

Bfl-Mir-92-o8_3p

mirBase accession

MIMAT0009989

Sequence

43- UAUUGCACUAAUUUGCUUUUGA -65

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