MirGeneDB 2.1
MirGeneDB ID

Bla-Mir-92-o6

Family name MIR-92 (all species)
Seed AUUGCAC
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-92-o1  Bla-Mir-92-o2  Bla-Mir-92-o3  Bla-Mir-92-o4  Bla-Mir-92-o5  Bla-Mir-92-o7  Bla-Mir-92-o8 
Orthologues Asu-Mir-92  Bfl-Mir-92-o6  Cel-Mir-92  Dan-Mir-92-P6  Dme-Mir-92-P6  Dmo-Mir-92-P6  Dsi-Mir-92-P6  Dya-Mir-92-P6a  Dya-Mir-92-P6b  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(BraLan2)		 Sc0000062: 529343-529403 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUAGCUCCGCCCCCUCUGUGUGAUGGACAGGUCAGGAUGGGGUGUUAUGCUGUGAACUUGGUGUCAGUAUUGCACUUAUCCUGGCCUGUCAAUUACGGCAGCUUCUCACCUGCGUGCAG
Get precursor sequence
Structure
        10         20         30        40        50        60
CAGUAGCUCCGCCCCCU-   -|     G                G   U     GUGAAC 
                  CUG UGUGAU GACAGGUCAGGAUGGG UGU AUGCU      U
                  GAC GCAUUA CUGUCCGGUCCUAUUC ACG UAUGA      U
GACGUGCGUCCACUCUUC   G^     A                -   U     CUGUGG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ad Ad Em Em Em Em
Star sequence

Bla-Mir-92-o6_5p*
mirBase accessionNone
Sequence 
0- AGGUCAGGAUGGGGUGUUAUGCU -23
Get sequence
Mature sequence

Bla-Mir-92-o6_3p
mirBase accessionNone
Sequence 
39- UAUUGCACUUAUCCUGGCCUGU -61
Get sequence