| MirGeneDB ID | Bla-Mir-92-o4 |
|---|
| Family name |
MIR-92 (all species) |
|---|
| Seed |
AUUGCAC |
|---|
| Species |
European lancelet (Branchiostoma lanceolatum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bla-Mir-92-o1
Bla-Mir-92-o2
Bla-Mir-92-o3
Bla-Mir-92-o5
Bla-Mir-92-o6
Bla-Mir-92-o7
Bla-Mir-92-o8
|
|---|
| Orthologues |
Asu-Mir-92
Bfl-Mir-92-o4
Cel-Mir-92
Dan-Mir-92-P4
Dme-Mir-92-P4
Dmo-Mir-92-P4
Dsi-Mir-92-P4
Dya-Mir-92-P4
Esc-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(BraLan2) |
Sc0000007: 2890480-2890541 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAGGUGACUGAAGACACGGCGUCUUUGCUCAGGUCUGGACAGUUGCAAUCUUCGUUCUGUCUCAGCCGAACAUUGCACUCGUCCCGGCCUGAGAAAUCCCGCCAAUUUUCAACGCAACUGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAGGUGACUGAAGACAC-- UCUUUG U -| U C CGUUCUG
GGCG CUCAGGUC GGAC AGU GCAAU UU U
CCGC GAGUCCGG CCUG UCA CGUUA AA C
CCGUCAACGCAACUUUUAA CCUAAA C C^ - C GCCGACU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bla-Mir-92-o4_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGUCUGGACAGUUGCAAUCUU -22
Get sequence
|
|---|
| Mature sequence |
Bla-Mir-92-o4_3p |
| mirBase accession | None |
|---|
| Sequence |
40- CAUUGCACUCGUCCCGGCCUGA -62
Get sequence
|
|---|
