MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-92-P2d

Family name MIR-92 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-25
Paralogues Eca-Mir-92-P1a  Eca-Mir-92-P1c  Eca-Mir-92-P1d  Eca-Mir-92-P2a  Eca-Mir-92-P2c 
Orthologues Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2d  Cel-Mir-92  Cfa-Mir-92-P2d  Cja-Mir-92-P2d  Cmi-Mir-92-P2d  Cpo-Mir-92-P2d  Dno-Mir-92-P2d  Dre-Mir-92-P2d  Esc-Mir-92  Ete-Mir-92-P2d  Gmo-Mir-92-P2d  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2d  Isc-Mir-92  Laf-Mir-92-P2d  Lch-Mir-92-P2d  Loc-Mir-92-P2d  Mal-Mir-92-P2d  Mdo-Mir-92-P2d  Mml-Mir-92-P2d  Mmr-Mir-92-P2d  Mmu-Mir-92-P2d  Oan-Mir-92-P2d  Obi-Mir-92  Ocu-Mir-92-P2d  Pab-Mir-92-P2d  Rno-Mir-92-P2d  Sha-Mir-92-P2d  Sme-Mir-92  Tni-Mir-92-P2d  Xla-Mir-92-P2d3  Xla-Mir-92-P2d4  Xtr-Mir-92-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009160.1: 8114925-8114984 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P2d)		 Mir-92-P2d CM009160.1: 8114925-8114984 [-] UCSC Ensembl
Mir-17-P4d CM009160.1: 8115130-8115191 [-] UCSC Ensembl
Mir-17-P1d CM009160.1: 8115356-8115417 [-] UCSC Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
AGCUGAACACCGGGACUGGCCAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGACGCUGCCCUGGGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCCCCACACGGCGGAUGUUUGG
Get precursor sequence
Structure
        10          20        30        40         50          
AGCUGAACACCGGGACU--|   A UG   AG    G     UU  -     U   GGACGC 
                   GGCC G  UUG  AGGC GAGAC  GG GCAAU GCU      \
                   CCGG C  GAC  UCUG CUCUG  UC CGUUA CGG      U
GGUUUGUAGGCGGCACACC^   C GU   AG    G     U-  A     -   GUCCCG 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-92-P2d_5p*
mirBase accessionNone
Sequence 
0- AGGCGGAGACUUGGGCAAUUGCU -23
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Mature sequence

Eca-Mir-92-P2d_3p
mirBase accessionMIMAT0013057
Sequence 
38- CAUUGCACUUGUCUCGGUCUGA -60
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