MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-92-P1c

Family name MIR-92 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-92a-2
Paralogues Eca-Mir-92-P1a  Eca-Mir-92-P1d  Eca-Mir-92-P2a  Eca-Mir-92-P2c  Eca-Mir-92-P2d 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cja-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gja-Mir-92-P1c  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1c  Isc-Mir-92  Laf-Mir-92-P1c  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmr-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Neu-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Pab-Mir-92-P1c  Pbv-Mir-92-P1c  Rno-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xtr-Mir-92-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 110758530-110758590 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1c)		 Mir-92-P2c CM009179.1: 110758369-110758433 [-] UCSC Ensembl
Mir-92-P1c CM009179.1: 110758530-110758590 [-] UCSC Ensembl
Mir-19-P2c CM009179.1: 110758667-110758732 [-] UCSC Ensembl
Mir-17-P4c CM009179.1: 110758796-110758856 [-] UCSC Ensembl
Mir-17-P2c CM009179.1: 110759029-110759091 [-] UCSC Ensembl
Mir-17-P1c CM009179.1: 110759193-110759251 [-] UCSC Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
UAUCUCCGCCACGCAUACCCAUUCAUCCGUGGGUGGGGAUUUGUUGCAUUACUUGUGUUAUAUAUAAAGUAUUGCACUUGUCCCGGCCUGUGGAAGAAAGGAGGAUUUUAUCGUCUUUUUA
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Structure
        10          20        30        40        50        60
UAUCUCCGCCACGCAUAC--| A   A    UG   G     UU  U   U    UGUGUU 
                    CC UUC UCCG  GGU GGGAU  GU GCA UACU      A
                    GG AAG AGGU  CCG CCCUG  CA CGU AUGA      U
AUUUUUCUGCUAUUUUAGGA^ A   A    GU   G     UU  -   U    AAUAUA 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-92-P1c_5p*
mirBase accessionNone
Sequence 
0- GGGUGGGGAUUUGUUGCAUUACU -23
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Mature sequence

Eca-Mir-92-P1c_3p
mirBase accessionMIMAT0013089
Sequence 
39- UAUUGCACUUGUCCCGGCCUGU -61
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