MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-92-P1c

Family name MIR-92 (all species)
Seed AUUGCAC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-92a-2
Paralogues Rno-Mir-92-P1a  Rno-Mir-92-P1d  Rno-Mir-92-P2a  Rno-Mir-92-P2c  Rno-Mir-92-P2d 
Orthologues Aca-Mir-92-P1c  Ami-Mir-92-P1c  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1c  Cel-Mir-92  Cfa-Mir-92-P1c  Cli-Mir-92-P1c  Cmi-Mir-92-P1c  Cpi-Mir-92-P1c  Cpo-Mir-92-P1c  Dno-Mir-92-P1c  Esc-Mir-92  Ete-Mir-92-P1c  Gga-Mir-92-P1c  Gja-Mir-92-P1c  Hsa-Mir-92-P1c  Isc-Mir-92  Mdo-Mir-92-P1c  Mml-Mir-92-P1c  Mmu-Mir-92-P1c  Mun-Mir-92-P1c  Oan-Mir-92-P1c  Obi-Mir-92  Ocu-Mir-92-P1c  Pbv-Mir-92-P1c  Sha-Mir-92-P1c  Sme-Mir-92  Spt-Mir-92-P1c  Sto-Mir-92-P1c  Tgu-Mir-92-P1c  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xtr-Mir-92-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(rn6)
chrX: 140117265-140117325 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1c)
Mir-92-P2c chrX: 140117108-140117172 [-] UCSC Ensembl
Mir-92-P1c chrX: 140117265-140117325 [-] UCSC Ensembl
Mir-19-P2c chrX: 140117391-140117456 [-] UCSC Ensembl
Mir-17-P4c chrX: 140117522-140117582 [-] UCSC Ensembl
Mir-17-P1c chrX: 140117900-140117958 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACCUUUAGCACCCAUGCCCAUUCAUCCACAGGUGGGGAUUAGUGCCAUUACUUGUGUUAGAUAAAAAGUAUUGCACUUGUCCCGGCCUGAGGAAGAAAAGAGGGUUUUUAAUCAUCUUUU
Get precursor sequence
Structure
        10        20          30        40        50        60
CACCUUUAGCACCCAUGCCCA--|  A   A     G     U     CAU    UGUGUU 
                       UUC UCC CAGGU GGGAU AGUGC   UACU      A
                       AAG AGG GUCCG CCCUG UCACG   AUGA      G
UUUUCUACUAAUUUUUGGGAGAA^  A   A     G     U     UU-    AAAAUA 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-92-P1c_5p*

mirBase accessionMIMAT0017108
Sequence
0- AGGUGGGGAUUAGUGCCAUUACU -23
Get sequence
Proposed targets TargetScanVert: rno-miR-92a-2-5p
miRDB: MIMAT0017108
Mature sequence

Rno-Mir-92-P1c_3p

mirBase accessionMIMAT0000816
Sequence
39- UAUUGCACUUGUCCCGGCCUGA -61
Get sequence
Proposed targets microrna.org: MIMAT0000816
TargetScanVert: rno-miR-92a-3p
miRDB: MIMAT0000816