Mir-92-P1c

MirGeneDB ID

Gga-Mir-92-P1c

Family name

MIR-92 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-92-2

Paralogues

Gga-Mir-92-P1a Gga-Mir-92-P2a Gga-Mir-92-P2c

Orthologues

Aca-Mir-92-P1c Ami-Mir-92-P1c Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1c Cel-Mir-92 Cfa-Mir-92-P1c Cja-Mir-92-P1c Cli-Mir-92-P1c Cmi-Mir-92-P1c Cpi-Mir-92-P1c Cpo-Mir-92-P1c Dno-Mir-92-P1c Eca-Mir-92-P1c Esc-Mir-92 Ete-Mir-92-P1c Gja-Mir-92-P1c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1c Isc-Mir-92 Laf-Mir-92-P1c Mdo-Mir-92-P1c Mml-Mir-92-P1c Mmr-Mir-92-P1c Mmu-Mir-92-P1c Mun-Mir-92-P1c Neu-Mir-92-P1c Oan-Mir-92-P1c Obi-Mir-92 Ocu-Mir-92-P1c Pab-Mir-92-P1c Pbv-Mir-92-P1c Rno-Mir-92-P1c Sha-Mir-92-P1c Sme-Mir-92 Spt-Mir-92-P1c Sto-Mir-92-P1c Tgu-Mir-92-P1c Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xtr-Mir-92-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

4: 3967357-3967418 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1c)

Mir-92-P2c 4: 3967217-3967281 [-] UCSC Ensembl
Mir-92-P1c 4: 3967357-3967418 [-] UCSC Ensembl
Mir-19-P2c 4: 3967505-3967564 [-] UCSC Ensembl
Mir-17-P4c 4: 3967641-3967701 [-] UCSC Ensembl
Mir-17-P2c 4: 3967813-3967877 [-] UCSC Ensembl
Mir-17-P1c 4: 3967949-3968006 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

UCCGAAGAUGCCUUGCGCUGGUUCCUCCGUGGGUGGGGAUUUGUUGCAUUACUUGUAGCUGUGUGUAGAGUAUUGCACUUGUCCCGGCCUGUGGAGGAAAGGAGGACUGGUCUUCAGGCUGC

Get precursor sequence

Structure

        10           20        30        40        50        60 
UCCGAAGAUGCCUUGCG---| GG        UG   G     UU  U   U    UGUAGCU 
                    CU  UUCCUCCG  GGU GGGAU  GU GCA UACU       \
                    GG  AAGGAGGU  CCG CCCUG  CA CGU AUGA       G
CGUCGGACUUCUGGUCAGGA^ A-        GU   G     UU  -   U    GAUGUGU 
120       110       100         90        80         70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut on the 5p arm +2 relative as well as a second Dicer cut +1 on the 5p arm.

3' NTU

Motifs

UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-92-P1c_5p*

mirBase accession

None

Sequence

0- GGGUGGGGAUUUGUUGCAUUACU -23

Get sequence

Mature sequence

Gga-Mir-92-P1c_3p

mirBase accession

MIMAT0001109

Sequence

40- UAUUGCACUUGUCCCGGCCUGU -62

Get sequence