Mir-92-P1c

MirGeneDB ID

Mml-Mir-92-P1c

Family name

MIR-92 (all species)

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-92a-2

Paralogues

Mml-Mir-92-P1a Mml-Mir-92-P1d Mml-Mir-92-P2a Mml-Mir-92-P2c Mml-Mir-92-P2d

Orthologues

Aca-Mir-92-P1c Ami-Mir-92-P1c Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1c Cel-Mir-92 Cfa-Mir-92-P1c Cja-Mir-92-P1c Cli-Mir-92-P1c Cmi-Mir-92-P1c Cpi-Mir-92-P1c Cpo-Mir-92-P1c Dno-Mir-92-P1c Eca-Mir-92-P1c Esc-Mir-92 Ete-Mir-92-P1c Gga-Mir-92-P1c Gja-Mir-92-P1c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1c Isc-Mir-92 Laf-Mir-92-P1c Mdo-Mir-92-P1c Mmr-Mir-92-P1c Mmu-Mir-92-P1c Mun-Mir-92-P1c Neu-Mir-92-P1c Oan-Mir-92-P1c Obi-Mir-92 Ocu-Mir-92-P1c Pab-Mir-92-P1c Pbv-Mir-92-P1c Rno-Mir-92-P1c Sha-Mir-92-P1c Sme-Mir-92 Spt-Mir-92-P1c Sto-Mir-92-P1c Tgu-Mir-92-P1c Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xtr-Mir-92-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 130425233-130425293 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1c)

Mir-92-P2c CM014356.1: 130425071-130425135 [-] UCSC Ensembl
Mir-92-P1c CM014356.1: 130425233-130425293 [-] UCSC Ensembl
Mir-19-P2c CM014356.1: 130425372-130425437 [-] UCSC Ensembl
Mir-17-P4c CM014356.1: 130425501-130425561 [-] UCSC Ensembl
Mir-17-P2c CM014356.1: 130425731-130425795 [-] UCSC Ensembl
Mir-17-P1c CM014356.1: 130425897-130425955 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

CAUCUCCGGCACUCAUGCCCAUUCAUCCCUGGGUGGGGAUUUGUUGCAUUACUUGUGUUCUAUAUAAAGUAUUGCACUUGUCCCGGCCUGUGGAAGAAAGGAGGAUUUUUAUCGUCUUCUU

Get precursor sequence

Structure

        10          20        30        40        50        60
CAUCUCCGGCACUCAUGC--| A   A   C     G     UU  U   U    UGUGUU 
                    CC UUC UCC UGGGU GGGAU  GU GCA UACU      C
                    GG AAG AGG GUCCG CCCUG  CA CGU AUGA      U
UUCUUCUGCUAUUUUUAGGA^ A   A   U     G     UU  -   U    AAUAUA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Star sequence

Mml-Mir-92-P1c_5p*

mirBase accession

MIMAT0026809

Sequence

0- GGGUGGGGAUUUGUUGCAUUACU -23

Get sequence

Proposed targets

TargetScanVert: mml-miR-92a-5p

Mature sequence

Mml-Mir-92-P1c_3p

mirBase accession

MIMAT0002706

Sequence

39- UAUUGCACUUGUCCCGGCCUGU -61

Get sequence

Proposed targets

TargetScanVert: mml-miR-92a-3p