Mir-92-P2a

MirGeneDB ID

Gga-Mir-92-P2a

Family name

MIR-92 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-367

Paralogues

Gga-Mir-92-P1a Gga-Mir-92-P1c Gga-Mir-92-P2c

Orthologues

Aca-Mir-92-P2a Ami-Mir-92-P2a Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2a Cel-Mir-92 Cfa-Mir-92-P2a Cja-Mir-92-P2a Cli-Mir-92-P2a Cmi-Mir-92-P2a Cpi-Mir-92-P2a Cpo-Mir-92-P2a Dno-Mir-92-P2a Eca-Mir-92-P2a Esc-Mir-92 Ete-Mir-92-P2a Gja-Mir-92-P2a Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2a Isc-Mir-92 Laf-Mir-92-P2a Mdo-Mir-92-P2a Mml-Mir-92-P2a Mmr-Mir-92-P2a Mmu-Mir-92-P2a Mun-Mir-92-P2a Neu-Mir-92-P2a Oan-Mir-92-P2a Obi-Mir-92 Ocu-Mir-92-P2a Pab-Mir-92-P2a Rno-Mir-92-P2a Sha-Mir-92-P2a Sme-Mir-92 Spt-Mir-92-P2a Sto-Mir-92-P2a Tgu-Mir-92-P2a Xla-Mir-92-P2a Xtr-Mir-92-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

4: 57085223-57085282 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2a)

Mir-430-P1 4: 57084186-57084246 [+] UCSC Ensembl
Mir-430-P2 4: 57084446-57084502 [+] UCSC Ensembl
Mir-430-P3 4: 57084749-57084807 [+] UCSC Ensembl
Mir-430-P4 4: 57085084-57085144 [+] UCSC Ensembl
Mir-92-P2a 4: 57085223-57085282 [+] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

GGUUUUCAUCCUUCUCGGCUACAGGCUAAUACUGUUGCUAACAUGCAACUCUGUUGUAUAAAAAUUGGAAUUGCACUUUAGCAAUGGUGAUGGACUGUAAGACAUGCACACCGAGUUGCA

Get precursor sequence

Structure

        10          20        30        40        50         
GGUUUUCAUCCUUCUCGGC--|    G   A            CA     C   GUUGUA 
                     UACAG CUA UACUGUUGCUAA  UGCAA UCU      U
                     AUGUC GGU GUGGUAACGAUU  ACGUU AGG      A
ACGUUGAGCCACACGUACAGA^    A   A            UC     A   UUAAAA 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-92-P2a_5p*

mirBase accession

None

Sequence

0- ACUGUUGCUAACAUGCAACUCU -22

Get sequence

Mature sequence

Gga-Mir-92-P2a_3p

mirBase accession

MIMAT0003369

Sequence

38- AAUUGCACUUUAGCAAUGGUGA -60

Get sequence

Proposed targets

TargetScanVert: gga-miR-367
miRDB: MIMAT0003369