Mir-92-P2a

MirGeneDB ID

Bta-Mir-92-P2a

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-367

Paralogues

Bta-Mir-92-P1a Bta-Mir-92-P1c Bta-Mir-92-P1d Bta-Mir-92-P2c Bta-Mir-92-P2d

Orthologues

Aca-Mir-92-P2a Ami-Mir-92-P2a Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Cel-Mir-92 Cfa-Mir-92-P2a Cli-Mir-92-P2a Cmi-Mir-92-P2a Cpi-Mir-92-P2a Cpo-Mir-92-P2a Dno-Mir-92-P2a Esc-Mir-92 Ete-Mir-92-P2a Gga-Mir-92-P2a Gja-Mir-92-P2a Hsa-Mir-92-P2a Isc-Mir-92 Mdo-Mir-92-P2a Mml-Mir-92-P2a Mmu-Mir-92-P2a Mun-Mir-92-P2a Oan-Mir-92-P2a Obi-Mir-92 Ocu-Mir-92-P2a Rno-Mir-92-P2a Sha-Mir-92-P2a Sme-Mir-92 Spt-Mir-92-P2a Sto-Mir-92-P2a Tgu-Mir-92-P2a Xla-Mir-92-P2a Xtr-Mir-92-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037333.1: 12981076-12981135 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2a)

Mir-430-P1 NC_037333.1: 12980223-12980284 [+] UCSC Ensembl
Mir-430-P2 NC_037333.1: 12980362-12980421 [+] UCSC Ensembl
Mir-430-P3 NC_037333.1: 12980774-12980834 [+] UCSC Ensembl
Mir-430-P4 NC_037333.1: 12980950-12981012 [+] UCSC Ensembl
Mir-92-P2a NC_037333.1: 12981076-12981135 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUCUGUGCAGAUCAUGGCUUCAGGCCAUUACUGUUGCUAAUAUGCAACUCUGUUCAAUUCAAAUUGGAAUUGCACUUUAGCAAUGGUGAUGGAGUGUGUCAUUUGCCAACAAUAUAAUU

Get precursor sequence

Structure

        10           20        30        40        50         
CUUCUGUGCAGAUCAUG---| UU  GG                UA     C   GUUCAA 
                    GC  CA  CCAUUACUGUUGCUAA  UGCAA UCU      U
                    UG  GU  GGUAGUGGUAACGAUU  ACGUU AGG      U
UUAAUAUAACAACCGUUUAC^ U-  GA                UC     A   UUAAAC 
.       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-92-P2a_5p* (predicted)

mirBase accession

None

Sequence

0- ACUGUUGCUAAUAUGCAACUCU -22

Get sequence

Mature sequence

Bta-Mir-92-P2a_3p (predicted)

mirBase accession

MIMAT0009299

Sequence

38- AAUUGCACUUUAGCAAUGGUGA -60

Get sequence

Proposed targets

TargetScanVert: bta-miR-367