Mir-92-P2a

MirGeneDB ID

Cmi-Mir-92-P2a

Family name

MIR-92 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-92-P1a Cmi-Mir-92-P1b Cmi-Mir-92-P1c Cmi-Mir-92-P1d Cmi-Mir-92-P2b Cmi-Mir-92-P2c Cmi-Mir-92-P2d

Orthologues

Aca-Mir-92-P2a Ami-Mir-92-P2a Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2a Cel-Mir-92 Cfa-Mir-92-P2a Cja-Mir-92-P2a Cli-Mir-92-P2a Cpi-Mir-92-P2a Cpo-Mir-92-P2a Dno-Mir-92-P2a Eca-Mir-92-P2a Esc-Mir-92 Ete-Mir-92-P2a Gga-Mir-92-P2a Gja-Mir-92-P2a Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2a Isc-Mir-92 Laf-Mir-92-P2a Mdo-Mir-92-P2a Mml-Mir-92-P2a Mmr-Mir-92-P2a Mmu-Mir-92-P2a Mun-Mir-92-P2a Neu-Mir-92-P2a Oan-Mir-92-P2a Obi-Mir-92 Ocu-Mir-92-P2a Pab-Mir-92-P2a Rno-Mir-92-P2a Sha-Mir-92-P2a Sme-Mir-92 Spt-Mir-92-P2a Sto-Mir-92-P2a Tgu-Mir-92-P2a Xla-Mir-92-P2a Xtr-Mir-92-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635904.1: 4108747-4108805 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2a)

Mir-430-P4 KI635904.1: 4107448-4107504 [-] UCSC Ensembl
Mir-430-P3 KI635904.1: 4107569-4107628 [-] UCSC Ensembl
Mir-430-P2 KI635904.1: 4107710-4107769 [-] UCSC Ensembl
Mir-92-P2a KI635904.1: 4108747-4108805 [-] UCSC Ensembl
Mir-430-P1 KI635904.1: 4109282-4109340 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

GUUCUUUCACCAUAGCACCUAUGGUGUACCACCACUGCGAUCGUGCAAUGCUGUUUCUCUGUUCUGGUAUUGCACUUCAGCAAUGGUGAUGCACUGUACAGUACCUUCAUUCUCCAAUG

Get precursor sequence

Structure

        10          20        30        40        50         
GUUCUUUCACCAUAGCACC--|        C     C   GAUC          GUUUCU 
                     UAUGGUGUA CACCA UGC    GUGCAAUGCU      \
                     AUGUCACGU GUGGU ACG    CACGUUAUGG      C
GUAACCUCUUACUUCCAUGAC^        A     A   ACUU          UCUUGU 
       110       100        90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-92-P2a_5p* (predicted)

mirBase accession

None

Sequence

0- ACCACUGCGAUCGUGCAAUGCU -22

Get sequence

Mature sequence

Cmi-Mir-92-P2a_3p (predicted)

mirBase accession

None

Sequence

37- UAUUGCACUUCAGCAAUGGUGA -59

Get sequence