| MirGeneDB ID | Spt-Mir-92-P2a |
|---|---|
| Family name | MIR-92 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-92-P1a Spt-Mir-92-P1c Spt-Mir-92-P1d Spt-Mir-92-P2c |
| Orthologues | Aca-Mir-92-P2a Ami-Mir-92-P2a Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2a Cel-Mir-92 Cfa-Mir-92-P2a Cja-Mir-92-P2a Cli-Mir-92-P2a Cmi-Mir-92-P2a Cpi-Mir-92-P2a Cpo-Mir-92-P2a Dno-Mir-92-P2a Eca-Mir-92-P2a Esc-Mir-92 Ete-Mir-92-P2a Gga-Mir-92-P2a Gja-Mir-92-P2a Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2a Isc-Mir-92 Laf-Mir-92-P2a Mdo-Mir-92-P2a Mml-Mir-92-P2a Mmr-Mir-92-P2a Mmu-Mir-92-P2a Mun-Mir-92-P2a Neu-Mir-92-P2a Oan-Mir-92-P2a Obi-Mir-92 Ocu-Mir-92-P2a Pab-Mir-92-P2a Rno-Mir-92-P2a Sha-Mir-92-P2a Sme-Mir-92 Sto-Mir-92-P2a Tgu-Mir-92-P2a Xla-Mir-92-P2a Xtr-Mir-92-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01012655.1: 3308100-3308159 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-92-P2a) |
Mir-430-P1
QEPC01012655.1: 3307136-3307196 [+]
UCSC
Ensembl
Mir-430-P2 QEPC01012655.1: 3307379-3307436 [+] UCSC Ensembl Mir-430-P3 QEPC01012655.1: 3307625-3307688 [+] UCSC Ensembl Mir-430-P4 QEPC01012655.1: 3307778-3307837 [+] UCSC Ensembl Mir-92-P2a QEPC01012655.1: 3308100-3308159 [+] UCSC Ensembl |
| Seed | AUUGCAC |
| Precursor (pre-Mir +30nt flank) |
ACUUUGUUGUCUGUCUAGCUGCAGGCCACUACUGUUGCUAAUAUGCAACUCUGUUAUGUAAAAGCUGGAAUUGCACUUUAGCAAUGGUGAUGGAUUGCUAGUCUUAACAAAACACAGAUAGet precursor sequence |
| Structure | 10 20 30 40 50 ACUUUGUUGUCUGUCUA- -| G C UA C GUUAUG GCU GCAG CCA UACUGUUGCUAA UGCAA UCU U UGA CGUU GGU GUGGUAACGAUU ACGUU AGG A AUAGACACAAAACAAUUC U^ A A UC A UCGAAA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Spt-Mir-92-P2a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACUGUUGCUAAUAUGCAACUCU -22
Get sequence
|
| Mature sequence | Spt-Mir-92-P2a_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- AAUUGCACUUUAGCAAUGGUGA -60
Get sequence
|
