| MirGeneDB ID | Spt-Mir-430-P1 |
|---|---|
| Family name | MIR-430 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-430-P2 Spt-Mir-430-P3 Spt-Mir-430-P4 |
| Orthologues | Aca-Mir-430-P1 Ami-Mir-430-P1 Bta-Mir-430-P1 Cfa-Mir-430-P1 Cja-Mir-430-P1 Cli-Mir-430-P1 Cmi-Mir-430-P1 Cpi-Mir-430-P1 Cpo-Mir-430-P1 Dno-Mir-430-P1 Dre-Mir-430-o1a Dre-Mir-430-o1b1 Dre-Mir-430-o1b2 Dre-Mir-430-o1b3 Dre-Mir-430-o1b4 Dre-Mir-430-o1b5 Dre-Mir-430-o1b6 Dre-Mir-430-o1b7 Dre-Mir-430-o1b8 Dre-Mir-430-o1c Dre-Mir-430-o1d1 Dre-Mir-430-o1d2 Dre-Mir-430-o1d3 Dre-Mir-430-o1d4 Dre-Mir-430-o1d5 Dre-Mir-430-o1d6 Dre-Mir-430-o1d7 Dre-Mir-430-o1e1 Dre-Mir-430-o1e2 Dre-Mir-430-o1e3 Eca-Mir-430-P1 Ete-Mir-430-P1 Gga-Mir-430-P1 Hsa-Mir-430-P1 Laf-Mir-430-P1 Mdo-Mir-430-P1 Mml-Mir-430-P1 Mmr-Mir-430-P1 Mmu-Mir-430-P1 Mun-Mir-430-P1 Neu-Mir-430-P1 Oan-Mir-430-P1 Ocu-Mir-430-P1 Pab-Mir-430-P1 Rno-Mir-430-P1 Sha-Mir-430-P1 Sto-Mir-430-P1 Tgu-Mir-430-P1 Xla-Mir-430-P1a Xla-Mir-430-P1b Xtr-Mir-430-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01012655.1: 3307136-3307196 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-430-P1) |
Mir-430-P1
QEPC01012655.1: 3307136-3307196 [+]
UCSC
Ensembl
Mir-430-P2 QEPC01012655.1: 3307379-3307436 [+] UCSC Ensembl Mir-430-P3 QEPC01012655.1: 3307625-3307688 [+] UCSC Ensembl Mir-430-P4 QEPC01012655.1: 3307778-3307837 [+] UCSC Ensembl Mir-92-P2a QEPC01012655.1: 3308100-3308159 [+] UCSC Ensembl |
| Seed | AAGUGCU |
| Precursor (pre-Mir +30nt flank) |
CUGGAGCACUGGUUUAUGUGGACCCCUUCUACUUUAACAUGGAGGUGCUUUCUGUGUCUACAAAAAAGUAAGUGCUUCCAUGUUUUAGUAGAGGUGAAUCCUGUUCUGUCCUGGAGCAUCCGet precursor sequence |
| Structure | 10 20 30 40 50 CUGGAGCACUGGUUUAUGU- CCC-| UU UG U GUGUCU GGA CUUCUACU AACAUGGAGG CUU CU \ CCU GGAGAUGA UUGUACCUUC GAA GA A CCUACGAGGUCCUGUCUUGU AAGU^ UU GU U AAAAAC . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), UGUG in loop |
| Star sequence | Spt-Mir-430-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACUUUAACAUGGAGGUGCUUUCU -23
Get sequence
|
| Mature sequence | Spt-Mir-430-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UAAGUGCUUCCAUGUUUUAGUAG -61
Get sequence
|
