Mir-430-P1

MirGeneDB ID

Oan-Mir-430-P1

Family name

MIR-430 (all species)

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-302-2

Paralogues

Oan-Mir-430-P2 Oan-Mir-430-P3 Oan-Mir-430-P4 Oan-Mir-430-P53 Oan-Mir-430-P54 Oan-Mir-430-P55 Oan-Mir-430-P56 Oan-Mir-430-P57 Oan-Mir-430-P58 Oan-Mir-430-P59 Oan-Mir-430-P60 Oan-Mir-430-P61

Orthologues

Aca-Mir-430-P1 Ami-Mir-430-P1 Bta-Mir-430-P1 Cfa-Mir-430-P1 Cja-Mir-430-P1 Cli-Mir-430-P1 Cmi-Mir-430-P1 Cpi-Mir-430-P1 Cpo-Mir-430-P1 Dno-Mir-430-P1 Dre-Mir-430-o1a Dre-Mir-430-o1b1 Dre-Mir-430-o1b2 Dre-Mir-430-o1b3 Dre-Mir-430-o1b4 Dre-Mir-430-o1b5 Dre-Mir-430-o1b6 Dre-Mir-430-o1b7 Dre-Mir-430-o1b8 Dre-Mir-430-o1c Dre-Mir-430-o1d1 Dre-Mir-430-o1d2 Dre-Mir-430-o1d3 Dre-Mir-430-o1d4 Dre-Mir-430-o1d5 Dre-Mir-430-o1d6 Dre-Mir-430-o1d7 Dre-Mir-430-o1e1 Dre-Mir-430-o1e2 Dre-Mir-430-o1e3 Eca-Mir-430-P1 Ete-Mir-430-P1 Gga-Mir-430-P1 Hsa-Mir-430-P1 Laf-Mir-430-P1 Mdo-Mir-430-P1 Mml-Mir-430-P1 Mmr-Mir-430-P1 Mmu-Mir-430-P1 Mun-Mir-430-P1 Neu-Mir-430-P1 Ocu-Mir-430-P1 Pab-Mir-430-P1 Rno-Mir-430-P1 Sha-Mir-430-P1 Spt-Mir-430-P1 Sto-Mir-430-P1 Tgu-Mir-430-P1 Xla-Mir-430-P1a Xla-Mir-430-P1b Xtr-Mir-430-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041739.1: 34492840-34492898 [+]

Clustered miRNAs
(< 50kb from Mir-430-P1)

Mir-430-P1 NC_041739.1: 34492840-34492898 [+]
Mir-430-P2 NC_041739.1: 34493073-34493130 [+]
Mir-430-P3 NC_041739.1: 34493236-34493293 [+]
Mir-430-P4 NC_041739.1: 34493344-34493404 [+]
Mir-92-P2a NC_041739.1: 34493535-34493594 [+]

Seed

AAGUGCU

Precursor
(pre-Mir +30nt flank)

AUCCAGUGGUAUUGUGCGUGGGCCCCUUCUACUUUAACAUGGAGGUGCUUUCUGUGAUUUAAAAAGUAAGUGCUUCCAUGUUUUAGUAGAGGUGAAUCCUGCUUUUUCAAUAAUGGACC

Get precursor sequence

Structure

        10         20         30        40        50         
AUCCAGUGGUAUUGUGCGU-   CCC-|       UU          UG   U  GUGAU 
                    GGG    CUUCUACU  AACAUGGAGG  CUU CU     \
                    CCU    GGAGAUGA  UUGUACCUUC  GAA GA     U
CCAGGUAAUAACUUUUUCGU   AAGU^       UU          GU   U  AAAAU 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Oan-Mir-430-P1_5p* (predicted)

mirBase accession

MIMAT0007194

Sequence

0- ACUUUAACAUGGAGGUGCUUUCU -23

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Mature sequence

Oan-Mir-430-P1_3p

mirBase accession

MIMAT0007195

Sequence

36- UAAGUGCUUCCAUGUUUUAGUAG -59

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