Mir-430-P55

MirGeneDB ID

Oan-Mir-430-P55

Family name

MIR-430 (all species)

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-1420c

Paralogues

Oan-Mir-430-P1 Oan-Mir-430-P2 Oan-Mir-430-P3 Oan-Mir-430-P4 Oan-Mir-430-P53 Oan-Mir-430-P54 Oan-Mir-430-P56 Oan-Mir-430-P57 Oan-Mir-430-P58 Oan-Mir-430-P59 Oan-Mir-430-P60 Oan-Mir-430-P61

Orthologues

Node of Origin (locus)

O. anatinus

Node of Origin (family)

Vertebrata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041737.1: 54187861-54187919 [+]

Clustered miRNAs
(< 50kb from Mir-430-P55)

Mir-430-P53 NC_041737.1: 54187151-54187209 [+]
Mir-430-P54 NC_041737.1: 54187300-54187360 [+]
Mir-430-P55 NC_041737.1: 54187861-54187919 [+]
Mir-430-P56 NC_041737.1: 54190035-54190095 [+]
Mir-430-P57 NC_041737.1: 54190187-54190244 [+]
Mir-430-P58 NC_041737.1: 54190481-54190536 [+]
Mir-430-P60 NC_041737.1: 54191452-54191511 [+]
Mir-430-P59 NC_041737.1: 54191591-54191649 [+]
Mir-430-P61 NC_041737.1: 54191823-54191881 [+]

Seed

AAGUGCU

Precursor
(pre-Mir +30nt flank)

UGAUGCUCACUUCACUGCUCAACCUUGCCUAUCCGAUCGGCUUGCACUGUCUGGUUAUAUUAAAGGGAAAGUGCUUCCCGUUCGGAUGAGUUAGGUUUGAGGUGUGACACCAGGACAGA

Get precursor sequence

Structure

        10         20         30        40        50         
UGAUGCUCACUUCACUG-   -|    U  C       U   CUU     G   GGUUAU 
                  CUC AACCU GC UAUCCGA CGG   GCACU UCU      \
                  GAG UUGGA UG GUAGGCU GCC   CGUGA AGG      A
AGACAGGACCACAGUGUG   U^    U  A       U   CUU     A   GAAAUU 
       110       100        90        80        70        60