MirGeneDB ID | Sto-Mir-430-P1 |
Family name |
MIR-430 (all species) |
Seed |
AAGUGCU |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-430-P2
Sto-Mir-430-P3
Sto-Mir-430-P4
|
Orthologues |
Aca-Mir-430-P1
Ami-Mir-430-P1
Bta-Mir-430-P1
Cfa-Mir-430-P1
Cli-Mir-430-P1
Cmi-Mir-430-P1
Cpi-Mir-430-P1
Cpo-Mir-430-P1
Dno-Mir-430-P1
Dre-Mir-430-o1a
Dre-Mir-430-o1b1
Dre-Mir-430-o1b2
Dre-Mir-430-o1b3
Dre-Mir-430-o1b4
Dre-Mir-430-o1b5
Dre-Mir-430-o1b6
Dre-Mir-430-o1b7
Dre-Mir-430-o1b8
Dre-Mir-430-o1c
Dre-Mir-430-o1d1
Dre-Mir-430-o1d2
Dre-Mir-430-o1d3
Dre-Mir-430-o1d4
Dre-Mir-430-o1d5
Dre-Mir-430-o1d6
Dre-Mir-430-o1d7
Dre-Mir-430-o1e1
Dre-Mir-430-o1e2
Dre-Mir-430-o1e3
Ete-Mir-430-P1
Gga-Mir-430-P1
Hsa-Mir-430-P1
Mdo-Mir-430-P1
Mml-Mir-430-P1
Mmu-Mir-430-P1
Mun-Mir-430-P1
Oan-Mir-430-P1
Ocu-Mir-430-P1
Rno-Mir-430-P1
Sha-Mir-430-P1
Spt-Mir-430-P1
Tgu-Mir-430-P1
Xla-Mir-430-P1a
Xla-Mir-430-P1b
Xtr-Mir-430-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01002990.1: 218430-218489 [-]
|
Precursor (pre-Mir +30nt flank) |
CAAUUAUCAGUUGUGAAAUGUGUCCCCUGUUACGUCAACAUUGAAGCCUUUCUGUGAUAUACUUCAGUAAGUGCUUUUAUGUUGAAGUGGUCGUGGAUACUUCAUUCUCUGCCAGUGAUA
Get precursor sequence
|
Structure | 10 20 30 40 50
CAAUUAUCAGUUGUGAAAU- CC - G U -| UCUGUGAU
GUGUCC UG UUAC UCAACAU GAAGC CUU A
CAUAGG GC GGUG AGUUGUA UUUCG GAA U
AUAGUGACCGUCUCUUACUU U- U A U U^ UGACUUCA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Sto-Mir-430-P1_5p* |
mirBase accession | None |
Sequence |
0- UACGUCAACAUUGAAGCCUUUC -22
Get sequence
|
Mature sequence |
Sto-Mir-430-P1_3p |
mirBase accession | None |
Sequence |
37- UAAGUGCUUUUAUGUUGAAGUGG -60
Get sequence
|