Mir-430-P1

MirGeneDB ID

Sha-Mir-430-P1

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-430-o10 Sha-Mir-430-o11 Sha-Mir-430-o12 Sha-Mir-430-o13 Sha-Mir-430-o14 Sha-Mir-430-o15 Sha-Mir-430-o16 Sha-Mir-430-o17 Sha-Mir-430-o18 Sha-Mir-430-o19 Sha-Mir-430-o20 Sha-Mir-430-o21 Sha-Mir-430-o22 Sha-Mir-430-o23 Sha-Mir-430-o24 Sha-Mir-430-o25 Sha-Mir-430-o26 Sha-Mir-430-o27 Sha-Mir-430-o29 Sha-Mir-430-P2 Sha-Mir-430-P3 Sha-Mir-430-P51

Orthologues

Aca-Mir-430-P1 Ami-Mir-430-P1 Bta-Mir-430-P1 Cfa-Mir-430-P1 Cja-Mir-430-P1 Cli-Mir-430-P1 Cmi-Mir-430-P1 Cpi-Mir-430-P1 Cpo-Mir-430-P1 Dno-Mir-430-P1 Dre-Mir-430-o1a Dre-Mir-430-o1b1 Dre-Mir-430-o1b2 Dre-Mir-430-o1b3 Dre-Mir-430-o1b4 Dre-Mir-430-o1b5 Dre-Mir-430-o1b6 Dre-Mir-430-o1b7 Dre-Mir-430-o1b8 Dre-Mir-430-o1c Dre-Mir-430-o1d1 Dre-Mir-430-o1d2 Dre-Mir-430-o1d3 Dre-Mir-430-o1d4 Dre-Mir-430-o1d5 Dre-Mir-430-o1d6 Dre-Mir-430-o1d7 Dre-Mir-430-o1e1 Dre-Mir-430-o1e2 Dre-Mir-430-o1e3 Eca-Mir-430-P1 Ete-Mir-430-P1 Gga-Mir-430-P1 Hsa-Mir-430-P1 Laf-Mir-430-P1 Mdo-Mir-430-P1 Mml-Mir-430-P1 Mmr-Mir-430-P1 Mmu-Mir-430-P1 Mun-Mir-430-P1 Neu-Mir-430-P1 Oan-Mir-430-P1 Ocu-Mir-430-P1 Pab-Mir-430-P1 Rno-Mir-430-P1 Spt-Mir-430-P1 Sto-Mir-430-P1 Tgu-Mir-430-P1 Xla-Mir-430-P1a Xla-Mir-430-P1b Xtr-Mir-430-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL864783.1: 411677-411738 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P1)

Mir-92-P2a GL864783.1: 411032-411091 [-] UCSC Ensembl
Mir-430-P3 GL864783.1: 411302-411362 [-] UCSC Ensembl
Mir-430-P2 GL864783.1: 411516-411575 [-] UCSC Ensembl
Mir-430-P1 GL864783.1: 411677-411738 [-] UCSC Ensembl

Seed

AAGUGCU

Precursor
(pre-Mir +30nt flank)

AGAACCACAGGAACUUAUGGGACCCCUUCUACUUUAACAUGGAGGUACUUUCUGUGACUAAAAAAAAAGUAAGUGCUUCCAUGUUUUGGUAGGAGUGACUCCUGUUCUCUUUCACCGAAUUC

Get precursor sequence

Structure

        10         20         30        40        50        60
AGAACCACAGGAACUUAU-    CCC-|       UU               U  GUGACU 
                   GGGA    CUUCUACU  AACAUGGAGGUACUU CU      A
                   UCCU    GAGGAUGG  UUGUACCUUCGUGAA GA      A
CUUAAGCCACUUUCUCUUG    CAGU^       UU               U  AAAAAA 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-430-P1_5p* (predicted)

mirBase accession

None

Sequence

0- ACUUUAACAUGGAGGUACUUUCU -23

Get sequence

Mature sequence

Sha-Mir-430-P1_3p

mirBase accession

None

Sequence

39- UAAGUGCUUCCAUGUUUUGGUAG -62

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