Mir-430-o15

MirGeneDB ID

Sha-Mir-430-o15

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-430-o10 Sha-Mir-430-o11 Sha-Mir-430-o12 Sha-Mir-430-o13 Sha-Mir-430-o14 Sha-Mir-430-o16 Sha-Mir-430-o17 Sha-Mir-430-o18 Sha-Mir-430-o19 Sha-Mir-430-o20 Sha-Mir-430-o21 Sha-Mir-430-o22 Sha-Mir-430-o23 Sha-Mir-430-o24 Sha-Mir-430-o25 Sha-Mir-430-o26 Sha-Mir-430-o27 Sha-Mir-430-o29 Sha-Mir-430-P1 Sha-Mir-430-P2 Sha-Mir-430-P3 Sha-Mir-430-P51

Orthologues

Hsa-Mir-430-P15 Mml-Mir-430-P15 Pab-Mir-430-P15

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL850554.1: 11170-11227 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-o15)

Mir-430-o24 GL850554.1: 7215-7274 [+] UCSC Ensembl
Mir-430-o25 GL850554.1: 7366-7425 [+] UCSC Ensembl
Mir-430-o29 GL850554.1: 7912-7971 [+] UCSC Ensembl
Mir-430-o10 GL850554.1: 8373-8431 [+] UCSC Ensembl
Mir-430-o11 GL850554.1: 9301-9361 [+] UCSC Ensembl
Mir-430-o12 GL850554.1: 9594-9645 [+] UCSC Ensembl
Mir-430-o13 GL850554.1: 10072-10130 [+] UCSC Ensembl
Mir-430-o14 GL850554.1: 10797-10856 [+] UCSC Ensembl
Mir-430-o15 GL850554.1: 11170-11227 [+] UCSC Ensembl
Mir-430-o16 GL850554.1: 11719-11778 [+] UCSC Ensembl
Mir-430-o17 GL850554.1: 13105-13161 [+] UCSC Ensembl
Mir-430-o18 GL850554.1: 14118-14177 [+] UCSC Ensembl
Mir-430-o19 GL850554.1: 14478-14536 [+] UCSC Ensembl
Mir-430-o20 GL850554.1: 15192-15251 [+] UCSC Ensembl
Mir-430-o21 GL850554.1: 15527-15586 [+] UCSC Ensembl

Seed

AAGUGCU

Precursor
(pre-Mir +30nt flank)

UUUCAAGAUAAGACUAGUCUCUUCUGACACACCCUAACUGAGGGCAUUUAUUGGAUAUAUGAAAAGAUAAGUGCUCUCUGUGGGGUGAGACAGGUUGAGAACUGACCUCGCCAUACUG

Get precursor sequence

Structure

        10         20         30        40        50         
UUUCAAGAUAAGACUAG-    U-|   ACA       ACU             GGAUAU 
                  UCUC  UCUG   CACCCUA   GAGGGCAUUUAUU      \
                  AGAG  GGAC   GUGGGGU   CUCUCGUGAAUAG      A
GUCAUACCGCUCCAGUCA    UU^   AGA       GU-             AAAAGU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-430-o15_5p* (predicted)

mirBase accession

None

Sequence

0- ACCCUAACUGAGGGCAUUUAUU -22

Get sequence

Mature sequence

Sha-Mir-430-o15_3p

mirBase accession

None

Sequence

37- UAAGUGCUCUCUGUGGGGUGA -58

Get sequence