MirGeneDB 3.0
139 microRNA genes with node of origin S. harrisii
Sort by genome coordinates Motifs
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Sha-Mir-430-o10 None MIR-430 CCCUAAC None None GL850554.1 8373 8431 + S. harrisii Vertebrata No
Sha-Mir-430-o11 None MIR-430 AAGUGCU None None GL850554.1 9301 9361 + S. harrisii Vertebrata No
Sha-Mir-430-o12 None MIR-430 AAGUGCU None None GL850554.1 9594 9645 + S. harrisii Vertebrata No 1
Sha-Mir-430-o13 None MIR-430 AAGUGUU None None GL850554.1 10072 10130 + S. harrisii Vertebrata No
Sha-Mir-430-o14 None MIR-430 AAGUGCU None None GL850554.1 10797 10856 + S. harrisii Vertebrata No
Sha-Mir-430-o15 None MIR-430 AAGUGCU None None GL850554.1 11170 11227 + S. harrisii Vertebrata No 1
Sha-Mir-430-o16 None MIR-430 UCCUAAC None None GL850554.1 11719 11778 + S. harrisii Vertebrata No
Sha-Mir-430-o17 None MIR-430 AAGUGCU None None GL850554.1 13105 13161 + S. harrisii Vertebrata No
Sha-Mir-430-o18 None MIR-430 AAGUGCC None None GL850554.1 14118 14177 + S. harrisii Vertebrata No
Sha-Mir-430-o19 None MIR-430 AAGUGCU None None GL850554.1 14478 14536 + S. harrisii Vertebrata No
Sha-Mir-430-o20 None MIR-430 AGGUGCU None None GL850554.1 15192 15251 + S. harrisii Vertebrata No
Sha-Mir-430-o21 None MIR-430 AAGUACU None None GL850554.1 15527 15586 + S. harrisii Vertebrata No
Sha-Mir-430-o22 None MIR-430 AAGUGCU None None GL852829.1 5148 5207 + S. harrisii Vertebrata No
Sha-Mir-430-o23 None MIR-430 ACGUGCU None None GL852829.1 5467 5526 + S. harrisii Vertebrata No
Sha-Mir-430-o24 None MIR-430 AAGUGCU None None GL850554.1 7215 7274 + S. harrisii Vertebrata No
Sha-Mir-430-o25 None MIR-430 UCCUAAC None None GL850554.1 7366 7425 + S. harrisii Vertebrata No
Sha-Mir-430-o26 None MIR-430 AAGUGCU None None GL835236.1 89594 89652 + S. harrisii Vertebrata No
Sha-Mir-430-o27 None MIR-430 UUCUAAC None None GL835236.1 89874 89933 + S. harrisii Vertebrata No
Sha-Mir-430-o29 None MIR-430 UUCUAAC None None GL850554.1 7912 7971 + S. harrisii Vertebrata No
Sha-Mir-7371-o1 None MIR-7371 CCUUUGU None None GL867598.1 1401798 1401859 - S. harrisii Marsupialia No 1
Sha-Mir-7371-o2 None MIR-7371 AGAGCAU None None GL867598.1 1403552 1403609 - S. harrisii Marsupialia No 1
Sha-Mir-7371-o3 None MIR-7371 AGAGCAU None None GL867598.1 1405296 1405356 - S. harrisii Marsupialia No 1
Sha-Mir-7371-o4 V None MIR-7371 AGAGCAU None None GL867598.1 1407246 1407303 - S. harrisii Marsupialia 2 Yes 1 1
Sha-Mir-7371-o13 None MIR-7371 CUUGGAU None None GL867599.1 281866 281924 + S. harrisii Marsupialia No 1 1 1
Sha-Mir-7371-o14 None MIR-7371 AUAAAUU None None GL867599.1 282161 282220 + S. harrisii Marsupialia No 1 1
Sha-Mir-7371-o15 None MIR-7371 CUUGGAU None None GL867599.1 283417 283476 + S. harrisii Marsupialia No 1 1
Sha-Mir-7371-o16 None MIR-7371 AUAAAUU None None GL867599.1 284323 284382 + S. harrisii Marsupialia No 1 1
Sha-Mir-7371-o17 None MIR-7371 CUUGGAU None None GL867599.1 284637 284696 + S. harrisii Marsupialia No 1 1 1
Sha-Mir-7371-o18 None MIR-7371 AUAAAUU None None GL867599.1 284786 284845 + S. harrisii Marsupialia No 1 1
Sha-Mir-7371-o19 None MIR-7371 CUUGGAU None None GL867599.1 285477 285536 + S. harrisii Marsupialia No 1
Sha-Mir-7371-o20 None MIR-7371 UCUGAUA None None GL867599.1 288456 288512 + S. harrisii Marsupialia Yes 1
Sha-Mir-7371-o24 None MIR-7371 AGUGGUG None None GL867599.1 330790 330846 + S. harrisii Marsupialia No 1
Sha-Mir-7371-o25 None MIR-7371 AGUCACA None None GL867599.1 306076 306133 + S. harrisii Marsupialia No 1
Sha-Mir-7371-o26 None MIR-7371 AGUCCCA None None GL867599.1 323224 323283 + S. harrisii Marsupialia No 1 1
Sha-Mir-7371-o27 None MIR-7371 AAGUAAC None None GL867599.1 309953 310010 + S. harrisii Marsupialia No 1
Sha-Mir-7371-o28 None MIR-7371 GUCGUCA None None GL867599.1 336354 336413 + S. harrisii Marsupialia No 1
Sha-Mir-7371-P11d None MIR-7371 ACGUGGA None None GL867599.1 264773 264832 + S. harrisii Marsupialia Yes
Sha-Mir-7371-P11e None MIR-7371 ACGUGGA None None GL867599.1 265109 265168 + S. harrisii Marsupialia Yes
Sha-Mir-7373-o1 None MIR-7373 AAUAUAA None None GL867601.1 2076373 2076427 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o2 None MIR-7373 CAGCUAC None None GL867601.1 2090784 2090838 - S. harrisii Marsupialia No 1
Sha-Mir-7373-o3 None MIR-7373 AGGCACU None None GL867601.1 2091074 2091128 - S. harrisii Marsupialia No
Sha-Mir-7373-o4 None MIR-7373 AGCCCUU None None GL867601.1 2081864 2081918 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o5 None MIR-7373 AGCCCUU None None GL867601.1 2074961 2075015 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o6 None MIR-7373 GUUAGAG None None GL867601.1 2080157 2080212 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o7 None MIR-7373 AGCCCUU None None GL867601.1 2089434 2089488 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8a None MIR-7373 AGCCCUU None None GL867601.1 2083689 2083746 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8b None MIR-7373 AGCCCUU None None GL867601.1 2083966 2084023 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8c None MIR-7373 AGCCCUU None None GL867601.1 2084243 2084300 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8d1 None MIR-7373 AGCCCUU None None GL867601.1 2085658 2085715 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8d2 None MIR-7373 AGCCCUU None None GL867601.1 2084520 2084577 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8e None MIR-7373 AGCCCUU None None GL867601.1 2085084 2085141 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8f None MIR-7373 AGCCCUU None None GL867601.1 2085945 2086002 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8g None MIR-7373 AGCCCUU None None GL867601.1 2086234 2086291 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8h None MIR-7373 AGCCCUU None None GL867601.1 2086519 2086576 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8i None MIR-7373 AGCCCUU None None GL867601.1 2086804 2086861 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8j None MIR-7373 AGCCCUU None None GL867601.1 2087091 2087148 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o9a None MIR-7373 AGCCCUU None None GL867601.1 2081577 2081634 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o9b None MIR-7373 AGCCCUU None None GL867601.1 2081002 2081059 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o9c None MIR-7373 AGCCCUU None None GL867601.1 2082143 2082200 - S. harrisii Marsupialia No 1 1
Sha-Mir-7383-P4a None MIR-7383 AAGGUAC None None GL867776.1 41842 41900 + S. harrisii Marsupialia No 1 1
Sha-Mir-7383-P4b None MIR-7383 AAGGUAC None None GL868515.1 2332 2390 - S. harrisii Marsupialia No 1 1
Sha-Mir-7383-P4c None MIR-7383 AAGGUAC None None GL867723.1 56066 56124 - S. harrisii Marsupialia No 1 1
Sha-Mir-7385-o1a None MIR-7385 AACUUAG None None GL867759.1 17410 17468 - S. harrisii Marsupialia No 1
Sha-Mir-7385-o1b None MIR-7385 AACUUAG None None GL867759.1 17134 17192 - S. harrisii Marsupialia No 1
Sha-Mir-7392-P2 None MIR-7392 ACGAGUA None None GL867604.1 507292 507347 + S. harrisii Marsupialia No 1
Sha-Mir-7392-P3 None MIR-7392 ACGAGUA None None GL867604.1 509380 509435 + S. harrisii Marsupialia No 1
Sha-Mir-7398-o5 None MIR-7398 AAAUUUC None None GL867608.1 2084664 2084724 + S. harrisii Marsupialia No 1
Sha-Mir-7398-o6 None MIR-7398 GUGUAGA None None GL867608.1 2087632 2087690 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-o7 None MIR-7398 GUGUAGA None None GL867608.1 2088260 2088322 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-o8 None MIR-7398 GUUGAGA None None GL867608.1 2090858 2090916 + S. harrisii Marsupialia No
Sha-Mir-7398-o9 None MIR-7398 GUGUAGA None None GL867608.1 2092125 2092182 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-o13 None MIR-7398 AACCCUC None None GL867608.1 2103168 2103224 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-o14 None MIR-7398 AAAUUCU None None GL867608.1 2104962 2105021 + S. harrisii Marsupialia No 1
Sha-Mir-7398-P5e None MIR-7398 GUGUGGA None None GL867608.1 2079471 2079531 + S. harrisii Marsupialia No 1
Sha-Mir-7398-P5f None MIR-7398 GUGUGGA None None GL867608.1 2080041 2080101 + S. harrisii Marsupialia No 1
Sha-Mir-7398-P9d V None MIR-7398 UGUGUAG None None GL867608.1 2081489 2081549 + S. harrisii Marsupialia 2 No 1 1
Sha-Mir-7398-P9e V None MIR-7398 UGUGUAG None None GL867608.1 2082124 2082184 + S. harrisii Marsupialia 2 No 1 1
Sha-Mir-7398-P24c V None MIR-7398 AUCUCAC None None GL867608.1 2099749 2099808 + S. harrisii Marsupialia 2 No 1 1
Sha-Mir-7398-P24d V None MIR-7398 AUCUCAC None None GL867608.1 2102079 2102138 + S. harrisii Marsupialia 2 No 1 1
Sha-Mir-12473 V None MIR-12473 CACUUGC None None None None None None S. harrisii Marsupialia 2 No
Sha-Mir-12475-P1 None MIR-12475 AUACGGU None None GL867614.1 336305 336365 + S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P2a None MIR-12475 AUACGGU None None GL867614.1 338936 338996 + S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P2b None MIR-12475 AUACGGU None None GL867614.1 337187 337247 + S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P3 None MIR-12475 ACACGGU None None GL867614.1 338074 338134 + S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P4 None MIR-12475 AGGCACU None None GL867614.1 342312 342372 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P5 None MIR-12475 AAACACU None None GL867614.1 345883 345943 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P6 None MIR-12475 UGGCAUC None None GL867614.1 347941 348002 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P7 None MIR-12475 AGCCAUU None None GL867614.1 348904 348964 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P8 None MIR-12475 AACGCUC None None GL867758.1 569 628 - S. harrisii Australidelphia No
Sha-Mir-12475-P9 None MIR-12475 AAACGCU None None GL867758.1 1832 1891 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P10 None MIR-12475 AAACACU None None GL867758.1 5377 5437 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P11 None MIR-12475 AAGCACU None None GL867758.1 7992 8052 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P12 None MIR-12475 AAACACU None None GL867758.1 13885 13946 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P13 None MIR-12475 AAACGCU None None GL867758.1 15164 15224 - S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P14 None MIR-12475 AAACGCU None None GL867758.1 17681 17741 - S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P15 None MIR-12475 AAACACU None None GL867758.1 21633 21692 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P16 None MIR-12475 AAACACU None None GL867758.1 22924 22983 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P17 None MIR-12475 CAAUGUG None None GL867762.1 5022 5082 + S. harrisii Australidelphia No 1
Sha-Mir-12475-P18 None MIR-12475 UCUGGUC None None GL867762.1 6910 6970 + S. harrisii Australidelphia No 1
Sha-Mir-12475-P19 None MIR-12475 AGACAUU None None GL867762.1 9239 9299 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P20a None MIR-12475 AGACAUU None None GL868171.1 9713 9773 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P20b None MIR-12475 AGACAUU None None GL867762.1 27481 27541 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P20c None MIR-12475 AGACAUU None None GL867762.1 13085 13145 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P20d None MIR-12475 AGACAUU None None GL868173.1 1850 1910 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P21 None MIR-12475 UGCAUCC None None GL867809.1 8611 8670 - S. harrisii Australidelphia Yes 1 1 1
Sha-Mir-12475-P22 None MIR-12475 AGCCUUU None None GL867809.1 15354 15414 - S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P23 None MIR-12475 AGACAUU None None GL867809.1 16790 16850 - S. harrisii Australidelphia Yes 1 1
Sha-Mir-12475-P24 None MIR-12475 AGCCAUU None None GL867809.1 18228 18288 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P25 None MIR-12475 AGCCUUU None None GL867809.1 21090 21150 - S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P26 None MIR-12475 AGACAUU None None GL867809.1 26679 26739 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P27a1 None MIR-12475 AGACAUC None None GL868173.1 372 432 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P27a2 None MIR-12475 AGACAUC None None GL867809.1 31494 31554 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P27b None MIR-12475 AGACAUC None None GL867809.1 33879 33939 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P27c None MIR-12475 UGACAUC None None GL868171.1 6266 6326 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P28 None MIR-12475 AAUGUGU None None GL867809.1 37724 37783 - S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P29 None MIR-12475 AGCCUUU None None GL867809.1 35328 35388 - S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P30 None MIR-12475 AAUGUGU None None GL867809.1 35804 35864 - S. harrisii Australidelphia No 1 1
Sha-Novel-1 None SHA-NOVEL-1 GGGCAGA None None GL867623.1 1370576 1370635 - S. harrisii S. harrisii No 1
Sha-Novel-2-P1a None SHA-NOVEL-2 UUCCCAA None None None None None None S. harrisii S. harrisii No
Sha-Novel-2-P1b None SHA-NOVEL-2 UUCCCAA None None None None None None S. harrisii S. harrisii No
Sha-Novel-2-P2 None SHA-NOVEL-2 GUGCCCA None None GL867900.1 156722 156780 + S. harrisii S. harrisii No 1
Sha-Novel-2-P3 None SHA-NOVEL-2 GUGCCCA None None GL867924.1 40191 40249 - S. harrisii S. harrisii No 1
Sha-Novel-2-P4 None SHA-NOVEL-2 UUCCCAA None None GL867924.1 17005 17071 - S. harrisii S. harrisii No 1
Sha-Novel-2-P5a None SHA-NOVEL-2 UUCCCAA None None None None None None S. harrisii S. harrisii No
Sha-Novel-2-P5b None SHA-NOVEL-2 UUCCCAA None None None None None None S. harrisii S. harrisii No
Sha-Novel-3 None SHA-NOVEL-3 GUCCGGC None None GL867614.1 335419 335477 + S. harrisii S. harrisii No 1 1 1
Sha-Novel-4 None SHA-NOVEL-4 GGCUAAG None None GL849918.1 206081 206139 - S. harrisii S. harrisii No 1
Sha-Novel-5 None SHA-NOVEL-5 UUGGGGG None None GL867582.1 180996 181052 + S. harrisii S. harrisii Yes 1
Sha-Novel-6 V sha-mir-340 SHA-NOVEL-6 CUAUAAA None MIMAT0022775 GL834730.1 741072 741130 - S. harrisii S. harrisii 2 No 1
Sha-Novel-7 None SHA-NOVEL-7 ACGCCUA None None GL857015.1 123701 123764 - S. harrisii S. harrisii No
Sha-Novel-8 None SHA-NOVEL-8 UCAAAUC None None GL834640.1 1948343 1948402 + S. harrisii S. harrisii No 1
Sha-Novel-9 None SHA-NOVEL-9 AGGAUAG None None GL849587.1 418445 418508 - S. harrisii S. harrisii No
Sha-Novel-10-P1a V None SHA-NOVEL-10 GAGGUUU None None None None None None S. harrisii S. harrisii 2 No
Sha-Novel-10-P1b V None SHA-NOVEL-10 GAGGUUU None None None None None None S. harrisii S. harrisii 2 No
Sha-Novel-10-P2a V None SHA-NOVEL-10 GAGGUUU None None None None None None S. harrisii S. harrisii 2 No
Sha-Novel-10-P2b V None SHA-NOVEL-10 GAGGUUU None None None None None None S. harrisii S. harrisii 2 No
Sha-Novel-10-P3 None SHA-NOVEL-10 GAGGUUU None None GL867904.1 83832 83888 + S. harrisii S. harrisii No 1
Sha-Novel-10-P4 None SHA-NOVEL-10 GAGGUUU None None GL867904.1 84439 84494 + S. harrisii S. harrisii No 1
Sha-Novel-10-P5 V None SHA-NOVEL-10 GAGGUUU None None GL867904.1 85513 85568 + S. harrisii S. harrisii 2 No 1

(red - mature/co-mature, blue - star)

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