MirGeneDB ID | Sha-Mir-7398-o13 |
Family name |
MIR-7398 (all species) |
Seed |
AACCCUC |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
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Paralogues |
Sha-Mir-7398-o1
Sha-Mir-7398-o2
Sha-Mir-7398-o3-v1
Sha-Mir-7398-o3-v2
Sha-Mir-7398-o4-v1
Sha-Mir-7398-o4-v2
Sha-Mir-7398-o5
Sha-Mir-7398-o6
Sha-Mir-7398-o7
Sha-Mir-7398-o8
Sha-Mir-7398-o9
Sha-Mir-7398-o10
Sha-Mir-7398-o11-v1
Sha-Mir-7398-o11-v2
Sha-Mir-7398-o12-v1
Sha-Mir-7398-o12-v2
Sha-Mir-7398-o14
|
Orthologues |
Mdo-Mir-7398-P13
|
Node of Origin (locus) |
S. harrisii
|
Node of Origin (family) |
Marsupialia
|
Genome context (DEVIL_add) |
GL867608.1: 2103168-2103224 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUUUGACCUUCCUCCUCCAGAUGCCCCACUGUUGAAAAGGGUGAGGGUACCGUGCACUAUCGGGUAACCCUCCCUUCUUUCACAGUGGAGCAGCUAGGACUCUUCUUCCAGACCCA
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUUUGACCUUCCUCCU- -| A C U - U - GUGCA
CC AG UGC CCACUGU GAAA AGGG GAGGGU ACC \
GG UC ACG GGUGACA CUUU UUCC CUCCCA UGG C
ACCCAGACCUUCUUCUCA A^ G A - C - A GCUAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Star sequence |
Sha-Mir-7398-o13_5p* |
mirBase accession | None |
Sequence |
0- UGUUGAAAAGGGUGAGGGUACC -22
Get sequence
|
Mature sequence |
Sha-Mir-7398-o13_3p |
mirBase accession | None |
Sequence |
35- UAACCCUCCCUUCUUUCACAGU -57
Get sequence
|