MirGeneDB ID | Sha-Mir-7398-o14 |
Family name |
MIR-7398 (all species) |
Seed |
AAAUUCU |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
Sha-Mir-7398-o1
Sha-Mir-7398-o2
Sha-Mir-7398-o3-v1
Sha-Mir-7398-o3-v2
Sha-Mir-7398-o4-v1
Sha-Mir-7398-o4-v2
Sha-Mir-7398-o5
Sha-Mir-7398-o6
Sha-Mir-7398-o7
Sha-Mir-7398-o8
Sha-Mir-7398-o9
Sha-Mir-7398-o10
Sha-Mir-7398-o11-v1
Sha-Mir-7398-o11-v2
Sha-Mir-7398-o12-v1
Sha-Mir-7398-o12-v2
Sha-Mir-7398-o13
|
Orthologues |
Mdo-Mir-7398-P14a
Mdo-Mir-7398-P14b
|
Node of Origin (locus) |
S. harrisii
|
Node of Origin (family) |
Marsupialia
|
Genome context (DEVIL_add) |
GL867608.1: 2104962-2105021 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUCUUGGGAUUUGGCCUCUAGGUGCCCAGCAGUGUUGAGGUUGGGAAUAUGCCAUGCUCUCUCUUGGGUAAAUUCUCAGCCUCUCACAGUUGAGCACCAAAGAUUCUUCUACUGUACCUU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCUUGGGAUUUGGCCUCUA--| C A UU A AUGCUC
GGUGC CAGC GUG GAGGUUGGGAAU UGCC \
CCACG GUUG CAC CUCCGACUCUUA AUGG U
UUCCAUGUCAUCUUCUUAGAAA^ A A U- A GUUCUC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Star sequence |
Sha-Mir-7398-o14_5p* |
mirBase accession | None |
Sequence |
0- AGUGUUGAGGUUGGGAAUAUGCC -23
Get sequence
|
Mature sequence |
Sha-Mir-7398-o14_3p |
mirBase accession | None |
Sequence |
38- UAAAUUCUCAGCCUCUCACAGU -60
Get sequence
|