Mir-7398-P24d-v1

MirGeneDB ID

Sha-Mir-7398-P24d

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-7398-o5 Sha-Mir-7398-o6 Sha-Mir-7398-o7 Sha-Mir-7398-o8 Sha-Mir-7398-o9 Sha-Mir-7398-o13 Sha-Mir-7398-o14 Sha-Mir-7398-P5e Sha-Mir-7398-P5f Sha-Mir-7398-P9d-v1 Sha-Mir-7398-P9e-v1 Sha-Mir-7398-P21 Sha-Mir-7398-P24c-v1

Orthologues

Neu-Mir-7398-P24

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Marsupialia

Genome context
(DEVIL_add)

GL867608.1: 2102079-2102138 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7398-P24d-v1)

Mir-7398-P5e GL867608.1: 2079471-2079531 [+] UCSC Ensembl
Mir-7398-P5f GL867608.1: 2080041-2080101 [+] UCSC Ensembl
Mir-7398-P9d-v1 GL867608.1: 2081489-2081549 [+] UCSC Ensembl
Mir-7398-P9d-v2 GL867608.1: 2081490-2081548 [+] UCSC Ensembl
Mir-7398-P9e-v1 GL867608.1: 2082124-2082184 [+] UCSC Ensembl
Mir-7398-P9e-v2 GL867608.1: 2082125-2082183 [+] UCSC Ensembl
Mir-7398-o5 GL867608.1: 2084664-2084724 [+] UCSC Ensembl
Mir-7398-o6 GL867608.1: 2087632-2087690 [+] UCSC Ensembl
Mir-7398-o7 GL867608.1: 2088260-2088322 [+] UCSC Ensembl
Mir-7398-o8 GL867608.1: 2090858-2090916 [+] UCSC Ensembl
Mir-7398-o9 GL867608.1: 2092125-2092182 [+] UCSC Ensembl
Mir-7398-P21 GL867608.1: 2093388-2093443 [+] UCSC Ensembl
Mir-7398-P24c-v2 GL867608.1: 2099749-2099808 [+] UCSC Ensembl
Mir-7398-P24c-v1 GL867608.1: 2099749-2099808 [+] UCSC Ensembl
Mir-7398-P24d-v1 GL867608.1: 2102079-2102138 [+] UCSC Ensembl
Mir-7398-P24d-v2 GL867608.1: 2102079-2102138 [+] UCSC Ensembl
Mir-7398-o13 GL867608.1: 2103168-2103224 [+] UCSC Ensembl
Mir-7398-o14 GL867608.1: 2104962-2105021 [+] UCSC Ensembl

Variant

Sha-Mir-7398-P24d-v1

Seed

AUCUCAC

Precursor
(pre-Mir +30nt flank)

CUCGGGCACUUCGCUUUCCAGAUGCCUGGCAGUGCAGAGGGUGGUGAGCAUGCUGUGGUCUCUCGAGUAUCUCACCUUUCUCUGACUGUCCAGCGUCUAGGACUCUGCUUCGACCCAGCC

Get precursor sequence

Structure

        10           20         30        40        50          
CUCGGGCACUUCGCUUU--  -|     C   -    G       U      C    UGUGGU 
                   CC AGAUGC UGG CAGU CAGAGGG GGUGAG AUGC      \
                   GG UCUGCG ACC GUCA GUCUCUU CCACUC UAUG      C
CCGACCCAGCUUCGUCUCA  A^     -   U    -       U      -    AGCUCU 
.       110       100         90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-7398-P24d-v1_5p*

mirBase accession

None

Sequence

0- AGUGCAGAGGGUGGUGAGCAUGC -23

Get sequence

Mature sequence

Sha-Mir-7398-P24d-v1_3p

mirBase accession

None

Sequence

37- UAUCUCACCUUUCUCUGACUGUC -60

Get sequence

Variant

Sha-Mir-7398-P24d-v2

Seed

UCUCACC

Precursor
(pre-Mir +30nt flank)

CUCGGGCACUUCGCUUUCCAGAUGCCUGGCAGUGCAGAGGGUGGUGAGCAUGCUGUGGUCUCUCGAGUAUCUCACCUUUCUCUGACUGUCCAGCGUCUAGGACUCUGCUUCGACCCAGCC

Get precursor sequence

Structure

        10           20         30        40        50          
CUCGGGCACUUCGCUUU--  -|     C   -    G       U      C    UGUGGU 
                   CC AGAUGC UGG CAGU CAGAGGG GGUGAG AUGC      \
                   GG UCUGCG ACC GUCA GUCUCUU CCACUC UAUG      C
CCGACCCAGCUUCGUCUCA  A^     -   U    -       U      -    AGCUCU 
.       110       100         90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-7398-P24d-v2_5p*

mirBase accession

None

Sequence

0- AGUGCAGAGGGUGGUGAGCAUGC -23

Get sequence

Mature sequence

Sha-Mir-7398-P24d-v2_3p

mirBase accession

None

Sequence

38- AUCUCACCUUUCUCUGACUGUC -60

Get sequence