Mir-7398-P9e-v1

MirGeneDB ID

Sha-Mir-7398-P9e

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-7398-o5 Sha-Mir-7398-o6 Sha-Mir-7398-o7 Sha-Mir-7398-o8 Sha-Mir-7398-o9 Sha-Mir-7398-o13 Sha-Mir-7398-o14 Sha-Mir-7398-P5e Sha-Mir-7398-P5f Sha-Mir-7398-P9d-v1 Sha-Mir-7398-P21 Sha-Mir-7398-P24c-v1 Sha-Mir-7398-P24d-v1

Orthologues

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Marsupialia

Genome context
(DEVIL_add)

GL867608.1: 2082124-2082184 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7398-P9e-v1)

Mir-7398-P5e GL867608.1: 2079471-2079531 [+] UCSC Ensembl
Mir-7398-P5f GL867608.1: 2080041-2080101 [+] UCSC Ensembl
Mir-7398-P9d-v1 GL867608.1: 2081489-2081549 [+] UCSC Ensembl
Mir-7398-P9d-v2 GL867608.1: 2081490-2081548 [+] UCSC Ensembl
Mir-7398-P9e-v1 GL867608.1: 2082124-2082184 [+] UCSC Ensembl
Mir-7398-P9e-v2 GL867608.1: 2082125-2082183 [+] UCSC Ensembl
Mir-7398-o5 GL867608.1: 2084664-2084724 [+] UCSC Ensembl
Mir-7398-o6 GL867608.1: 2087632-2087690 [+] UCSC Ensembl
Mir-7398-o7 GL867608.1: 2088260-2088322 [+] UCSC Ensembl
Mir-7398-o8 GL867608.1: 2090858-2090916 [+] UCSC Ensembl
Mir-7398-o9 GL867608.1: 2092125-2092182 [+] UCSC Ensembl
Mir-7398-P21 GL867608.1: 2093388-2093443 [+] UCSC Ensembl
Mir-7398-P24c-v2 GL867608.1: 2099749-2099808 [+] UCSC Ensembl
Mir-7398-P24c-v1 GL867608.1: 2099749-2099808 [+] UCSC Ensembl
Mir-7398-P24d-v1 GL867608.1: 2102079-2102138 [+] UCSC Ensembl
Mir-7398-P24d-v2 GL867608.1: 2102079-2102138 [+] UCSC Ensembl
Mir-7398-o13 GL867608.1: 2103168-2103224 [+] UCSC Ensembl
Mir-7398-o14 GL867608.1: 2104962-2105021 [+] UCSC Ensembl

Variant

Sha-Mir-7398-P9e-v1

Seed

UGUGUAG

Precursor
(pre-Mir +30nt flank)

UCUCCUUUUCUUUCACCUCCAGGUGCCCAAUUGUGUAGAGGUAAGAAAUAUGCUGUGUUCUUGGUUGGUAUAUUUCUUGCCUCUACCAAUUGAGCAUAUUGGACUUGGCUGCUGCCCUUUG

Get precursor sequence

Structure

        10         20         30        40        50        60
UCUCCUUUUCUUUCACC-     -|   C      U                   UGUGUU 
                  UCCAG GUGC CAAUUG GUAGAGGUAAGAAAUAUGC      C
                  AGGUU UACG GUUAAC CAUCUCCGUUCUUUAUAUG      U
GUUUCCCGUCGUCGGUUC     A^   A      -                   GUUGGU 
 .       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-7398-P9e-v1_5p

mirBase accession

None

Sequence

0- UUGUGUAGAGGUAAGAAAUAUGC -23

Get sequence

Star sequence

Sha-Mir-7398-P9e-v1_3p*

mirBase accession

None

Sequence

39- AUAUUUCUUGCCUCUACCAAUU -61

Get sequence

Variant

Sha-Mir-7398-P9e-v2

Seed

GUGUAGA

Precursor
(pre-Mir +30nt flank)

CUCCUUUUCUUUCACCUCCAGGUGCCCAAUUGUGUAGAGGUAAGAAAUAUGCUGUGUUCUUGGUUGGUAUAUUUCUUGCCUCUACCAAUUGAGCAUAUUGGACUUGGCUGCUGCCCUUU

Get precursor sequence

Structure

        10         20         30        40        50         
CUCCUUUUCUUUCACCU-    -|   C      U                    GUGUU 
                  CCAG GUGC CAAUUG GUAGAGGUAAGAAAUAUGCU     C
                  GGUU UACG GUUAAC CAUCUCCGUUCUUUAUAUGG     U
UUUCCCGUCGUCGGUUCA    A^   A      -                    UUGGU 
       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-7398-P9e-v2_5p

mirBase accession

None

Sequence

0- UGUGUAGAGGUAAGAAAUAUGCU -23

Get sequence

Star sequence

Sha-Mir-7398-P9e-v2_3p*

mirBase accession

None

Sequence

37- UAUAUUUCUUGCCUCUACCAAU -59

Get sequence