Mir-7398-P5f

MirGeneDB ID

Sha-Mir-7398-P5f

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-7398-o5 Sha-Mir-7398-o6 Sha-Mir-7398-o7 Sha-Mir-7398-o8 Sha-Mir-7398-o9 Sha-Mir-7398-o13 Sha-Mir-7398-o14 Sha-Mir-7398-P5e Sha-Mir-7398-P9d-v1 Sha-Mir-7398-P9e-v1 Sha-Mir-7398-P21 Sha-Mir-7398-P24c-v1 Sha-Mir-7398-P24d-v1

Orthologues

Neu-Mir-7398-P5

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Marsupialia

Genome context
(DEVIL_add)

GL867608.1: 2080041-2080101 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7398-P5f)

Mir-7398-P5e GL867608.1: 2079471-2079531 [+] UCSC Ensembl
Mir-7398-P5f GL867608.1: 2080041-2080101 [+] UCSC Ensembl
Mir-7398-P9d-v1 GL867608.1: 2081489-2081549 [+] UCSC Ensembl
Mir-7398-P9d-v2 GL867608.1: 2081490-2081548 [+] UCSC Ensembl
Mir-7398-P9e-v1 GL867608.1: 2082124-2082184 [+] UCSC Ensembl
Mir-7398-P9e-v2 GL867608.1: 2082125-2082183 [+] UCSC Ensembl
Mir-7398-o5 GL867608.1: 2084664-2084724 [+] UCSC Ensembl
Mir-7398-o6 GL867608.1: 2087632-2087690 [+] UCSC Ensembl
Mir-7398-o7 GL867608.1: 2088260-2088322 [+] UCSC Ensembl
Mir-7398-o8 GL867608.1: 2090858-2090916 [+] UCSC Ensembl
Mir-7398-o9 GL867608.1: 2092125-2092182 [+] UCSC Ensembl
Mir-7398-P21 GL867608.1: 2093388-2093443 [+] UCSC Ensembl
Mir-7398-P24c-v2 GL867608.1: 2099749-2099808 [+] UCSC Ensembl
Mir-7398-P24c-v1 GL867608.1: 2099749-2099808 [+] UCSC Ensembl
Mir-7398-P24d-v1 GL867608.1: 2102079-2102138 [+] UCSC Ensembl
Mir-7398-P24d-v2 GL867608.1: 2102079-2102138 [+] UCSC Ensembl
Mir-7398-o13 GL867608.1: 2103168-2103224 [+] UCSC Ensembl
Mir-7398-o14 GL867608.1: 2104962-2105021 [+] UCSC Ensembl

Seed

GUGUGGA

Precursor
(pre-Mir +30nt flank)

CUCCUGUUCUGUGACCUCCAGGUGCCCGACUGUGUGGAGGUAAGGAACUACGCCGUGUUCUCUCUUUCGGUAAAUCCUUACCUCUCACUGUUGGACAUCUAGGACUCUGCGACCAUCCCUA

Get precursor sequence

Structure

        10          20        30        40        50        60
CUCCUGUUCUGUGACCU-  -|    C     U   U           AC   GCCGUGUU 
                  CC AGGUG CCGAC GUG GGAGGUAAGGA  UAC        C
                  GG UCUAC GGUUG CAC UCUCCAUUCCU  AUG        U
AUCCCUACCAGCGUCUCA  A^    A     U   -           AA   GCUUUCUC 
 .       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-7398-P5f_5p

mirBase accession

None

Sequence

0- UGUGUGGAGGUAAGGAACUACGC -23

Get sequence

Star sequence

Sha-Mir-7398-P5f_3p*

mirBase accession

None

Sequence

39- GUAAAUCCUUACCUCUCACUGU -61

Get sequence