Mir-7371-o28

MirGeneDB ID

Sha-Mir-7371-o28

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-7371-o1 Sha-Mir-7371-o2 Sha-Mir-7371-o3 Sha-Mir-7371-o4-v1 Sha-Mir-7371-o13 Sha-Mir-7371-o14 Sha-Mir-7371-o15 Sha-Mir-7371-o16 Sha-Mir-7371-o17 Sha-Mir-7371-o18 Sha-Mir-7371-o19 Sha-Mir-7371-o20 Sha-Mir-7371-o24 Sha-Mir-7371-o25 Sha-Mir-7371-o26 Sha-Mir-7371-o27 Sha-Mir-7371-P11d Sha-Mir-7371-P11e Sha-Mir-7371-P12a Sha-Mir-7371-P12b Sha-Mir-7371-P13 Sha-Mir-7371-P15 Sha-Mir-7371-P17 Sha-Mir-7371-P18 Sha-Mir-7371-P19-v1 Sha-Mir-7371-P20 Sha-Mir-7371-P25 Sha-Mir-7371-P28a Sha-Mir-7371-P28b Sha-Mir-7371-P29 Sha-Mir-7371-P39

Orthologues

Mdo-Mir-7371-P28a Mdo-Mir-7371-P28b Neu-Mir-7371-P28a Neu-Mir-7371-P28b

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Marsupialia

Genome context
(DEVIL_add)

GL867599.1: 336354-336413 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7371-o28)

Mir-7371-o20 GL867599.1: 288456-288512 [+] UCSC Ensembl
Mir-7371-P25 GL867599.1: 288952-289010 [+] UCSC Ensembl
Mir-7371-P28a GL867599.1: 291545-291603 [+] UCSC Ensembl
Mir-7371-P28b GL867599.1: 291681-291739 [+] UCSC Ensembl
Mir-7371-P29 GL867599.1: 296036-296093 [+] UCSC Ensembl
Mir-7371-o25 GL867599.1: 306076-306133 [+] UCSC Ensembl
Mir-7371-o27 GL867599.1: 309953-310010 [+] UCSC Ensembl
Mir-7371-o26 GL867599.1: 323224-323283 [+] UCSC Ensembl
Mir-7371-P39 GL867599.1: 325951-326008 [+] UCSC Ensembl
Mir-7371-o24 GL867599.1: 330790-330846 [+] UCSC Ensembl
Mir-7371-o28 GL867599.1: 336354-336413 [+] UCSC Ensembl

Seed

GUCGUCA

Precursor
(pre-Mir +30nt flank)

UCUCCUACCAUCCUUCCUUCCAUUUGCCUCAGCUGUACAAAUGUGACAUUUUAUAGAUAAUAAUAAAGUCGUCAUAUUAUGUGCAGCAGUGGCAGUGGGAGAUAAGCCUUCCAGACAGAC

Get precursor sequence

Structure

        10           20        30         40         50        
UCUCCUACCAUCCUUCC---     U     UCA        -        -|    AUAGA 
                    UUCCA UUGCC   GCUGUACA AAUGUGAC AUUUU     U
                    AGGGU GACGG   CGACGUGU UUAUACUG UGAAA     A
CAGACAGACCUUCCGAAUAG     -     UGA        A        C^    UAAUA 
.       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-7371-o28_5p*

mirBase accession

None

Sequence

0- AGCUGUACAAAUGUGACAUUUU -22

Get sequence

Mature sequence

Sha-Mir-7371-o28_3p

mirBase accession

None

Sequence

36- AGUCGUCAUAUUAUGUGCAGCAGU -60

Get sequence