MirGeneDB 3.0

MirGeneDB ID

Sha-Mir-7371-o13

Family name MIR-7371 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-7371-o1  Sha-Mir-7371-o2  Sha-Mir-7371-o3  Sha-Mir-7371-o4-v1  Sha-Mir-7371-o14  Sha-Mir-7371-o15  Sha-Mir-7371-o16  Sha-Mir-7371-o17  Sha-Mir-7371-o18  Sha-Mir-7371-o19  Sha-Mir-7371-o20  Sha-Mir-7371-o24  Sha-Mir-7371-o25  Sha-Mir-7371-o26  Sha-Mir-7371-o27  Sha-Mir-7371-o28  Sha-Mir-7371-P11d  Sha-Mir-7371-P11e  Sha-Mir-7371-P12a  Sha-Mir-7371-P12b  Sha-Mir-7371-P13  Sha-Mir-7371-P15  Sha-Mir-7371-P17  Sha-Mir-7371-P18  Sha-Mir-7371-P19-v1  Sha-Mir-7371-P20  Sha-Mir-7371-P25  Sha-Mir-7371-P28a  Sha-Mir-7371-P28b  Sha-Mir-7371-P29  Sha-Mir-7371-P39 
Orthologues Mdo-Mir-7371-P13 
Node of Origin (locus) S. harrisii
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)
GL867599.1: 281866-281924 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7371-o13)
Mir-7371-P11d GL867599.1: 264773-264832 [+] UCSC Ensembl
Mir-7371-P11e GL867599.1: 265109-265168 [+] UCSC Ensembl
Mir-7371-P12a GL867599.1: 265411-265466 [+] UCSC Ensembl
Mir-7371-P13 GL867599.1: 266975-267033 [+] UCSC Ensembl
Mir-7371-P12b GL867599.1: 268115-268171 [+] UCSC Ensembl
Mir-7371-P15 GL867599.1: 269778-269829 [+] UCSC Ensembl
Mir-7371-P17 GL867599.1: 272217-272276 [+] UCSC Ensembl
Mir-7371-P18 GL867599.1: 273421-273478 [+] UCSC Ensembl
Mir-7371-P19-v2 GL867599.1: 274757-274816 [+] UCSC Ensembl
Mir-7371-P19-v1 GL867599.1: 274758-274815 [+] UCSC Ensembl
Mir-7371-P20 GL867599.1: 275372-275430 [+] UCSC Ensembl
Mir-7371-o13 GL867599.1: 281866-281924 [+] UCSC Ensembl
Mir-7371-o14 GL867599.1: 282161-282220 [+] UCSC Ensembl
Mir-7371-o15 GL867599.1: 283417-283476 [+] UCSC Ensembl
Mir-7371-o16 GL867599.1: 284323-284382 [+] UCSC Ensembl
Mir-7371-o17 GL867599.1: 284637-284696 [+] UCSC Ensembl
Mir-7371-o18 GL867599.1: 284786-284845 [+] UCSC Ensembl
Mir-7371-o19 GL867599.1: 285477-285536 [+] UCSC Ensembl
Mir-7371-o20 GL867599.1: 288456-288512 [+] UCSC Ensembl
Mir-7371-P25 GL867599.1: 288952-289010 [+] UCSC Ensembl
Mir-7371-P28a GL867599.1: 291545-291603 [+] UCSC Ensembl
Mir-7371-P28b GL867599.1: 291681-291739 [+] UCSC Ensembl
Mir-7371-P29 GL867599.1: 296036-296093 [+] UCSC Ensembl
Mir-7371-o25 GL867599.1: 306076-306133 [+] UCSC Ensembl
Mir-7371-o27 GL867599.1: 309953-310010 [+] UCSC Ensembl
Mir-7371-o26 GL867599.1: 323224-323283 [+] UCSC Ensembl
Mir-7371-P39 GL867599.1: 325951-326008 [+] UCSC Ensembl
Mir-7371-o24 GL867599.1: 330790-330846 [+] UCSC Ensembl
Seed CUUGGAU
Precursor
(pre-Mir +30nt flank)
AGAACGUCAGCUAGCCUGCCCAGCAGCCUUGCUUGGAUAAGGUACUCUAUUUUGUGAAUUUUGCCAGAAUAAUUUACCUUAUCCUUGGAGGCUGUUGGGAAAGAACUUCCUAGCCAAGU
Get precursor sequence
Structure
        10          20        30        40        50         
AGAACGUCAGCUAGCCUG--|           GCUU          CUC     UGUGAA 
                    CCCAGCAGCCUU    GGAUAAGGUA   UAUUU      U
                    GGGUUGUCGGAG    CCUAUUCCAU   AUAAG      U
UGAACCGAUCCUUCAAGAAA^           GUU-          UUA     ACCGUU 
       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-7371-o13_5p

mirBase accessionNone
Sequence
0- GCUUGGAUAAGGUACUCUAUUU -22
Get sequence
Star sequence

Sha-Mir-7371-o13_3p*

mirBase accessionNone
Sequence
37- AAUAAUUUACCUUAUCCUUGGA -59
Get sequence