Mir-7371-o18

MirGeneDB ID

Sha-Mir-7371-o18

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-7371-o1 Sha-Mir-7371-o2 Sha-Mir-7371-o3 Sha-Mir-7371-o4-v1 Sha-Mir-7371-o13 Sha-Mir-7371-o14 Sha-Mir-7371-o15 Sha-Mir-7371-o16 Sha-Mir-7371-o17 Sha-Mir-7371-o19 Sha-Mir-7371-o20 Sha-Mir-7371-o24 Sha-Mir-7371-o25 Sha-Mir-7371-o26 Sha-Mir-7371-o27 Sha-Mir-7371-o28 Sha-Mir-7371-P11d Sha-Mir-7371-P11e Sha-Mir-7371-P12a Sha-Mir-7371-P12b Sha-Mir-7371-P13 Sha-Mir-7371-P15 Sha-Mir-7371-P17 Sha-Mir-7371-P18 Sha-Mir-7371-P19-v1 Sha-Mir-7371-P20 Sha-Mir-7371-P25 Sha-Mir-7371-P28a Sha-Mir-7371-P28b Sha-Mir-7371-P29 Sha-Mir-7371-P39

Orthologues

Mdo-Mir-7371-P18 Neu-Mir-7371-P18

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Marsupialia

Genome context
(DEVIL_add)

GL867599.1: 284786-284845 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7371-o18)

Mir-7371-P11d GL867599.1: 264773-264832 [+] UCSC Ensembl
Mir-7371-P11e GL867599.1: 265109-265168 [+] UCSC Ensembl
Mir-7371-P12a GL867599.1: 265411-265466 [+] UCSC Ensembl
Mir-7371-P13 GL867599.1: 266975-267033 [+] UCSC Ensembl
Mir-7371-P12b GL867599.1: 268115-268171 [+] UCSC Ensembl
Mir-7371-P15 GL867599.1: 269778-269829 [+] UCSC Ensembl
Mir-7371-P17 GL867599.1: 272217-272276 [+] UCSC Ensembl
Mir-7371-P18 GL867599.1: 273421-273478 [+] UCSC Ensembl
Mir-7371-P19-v2 GL867599.1: 274757-274816 [+] UCSC Ensembl
Mir-7371-P19-v1 GL867599.1: 274758-274815 [+] UCSC Ensembl
Mir-7371-P20 GL867599.1: 275372-275430 [+] UCSC Ensembl
Mir-7371-o13 GL867599.1: 281866-281924 [+] UCSC Ensembl
Mir-7371-o14 GL867599.1: 282161-282220 [+] UCSC Ensembl
Mir-7371-o15 GL867599.1: 283417-283476 [+] UCSC Ensembl
Mir-7371-o16 GL867599.1: 284323-284382 [+] UCSC Ensembl
Mir-7371-o17 GL867599.1: 284637-284696 [+] UCSC Ensembl
Mir-7371-o18 GL867599.1: 284786-284845 [+] UCSC Ensembl
Mir-7371-o19 GL867599.1: 285477-285536 [+] UCSC Ensembl
Mir-7371-o20 GL867599.1: 288456-288512 [+] UCSC Ensembl
Mir-7371-P25 GL867599.1: 288952-289010 [+] UCSC Ensembl
Mir-7371-P28a GL867599.1: 291545-291603 [+] UCSC Ensembl
Mir-7371-P28b GL867599.1: 291681-291739 [+] UCSC Ensembl
Mir-7371-P29 GL867599.1: 296036-296093 [+] UCSC Ensembl
Mir-7371-o25 GL867599.1: 306076-306133 [+] UCSC Ensembl
Mir-7371-o27 GL867599.1: 309953-310010 [+] UCSC Ensembl
Mir-7371-o26 GL867599.1: 323224-323283 [+] UCSC Ensembl
Mir-7371-P39 GL867599.1: 325951-326008 [+] UCSC Ensembl
Mir-7371-o24 GL867599.1: 330790-330846 [+] UCSC Ensembl

Seed

AUAAAUU

Precursor
(pre-Mir +30nt flank)

CAGCCUAUAGCUAGCCUGCUCAGCAGCCCCGCUUGGAUAAGGUAUUCUUAUUUUUUGAAUUUUUCCAAAAUAAAUUACCUUAUCCUUGGAGGCCAUUGAGAGACAACUUCCCAGCUAAAC

Get precursor sequence

Structure

        10          20         30        40        50        60
CAGCCUAUAGCUAGCCUG--     CA   -|  CUU          UUC      UUUGAA 
                    CUCAG  GCC CCG   GGAUAAGGUA   UUAUUU      U
                    GAGUU  CGG GGU   CCUAUUCCAU   AAUAAA      U
CAAAUCGACCCUUCAACAGA     AC   A^  U--          UA-      ACCUUU 
.       110       100        90          80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-7371-o18_5p*

mirBase accession

None

Sequence

0- GCUUGGAUAAGGUAUUCUUAUUU -23

Get sequence

Mature sequence

Sha-Mir-7371-o18_3p

mirBase accession

None

Sequence

38- AAUAAAUUACCUUAUCCUUGGA -60

Get sequence