Mir-7371-o1

MirGeneDB ID

Sha-Mir-7371-o1

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-7371-o2 Sha-Mir-7371-o3 Sha-Mir-7371-o4-v1 Sha-Mir-7371-o13 Sha-Mir-7371-o14 Sha-Mir-7371-o15 Sha-Mir-7371-o16 Sha-Mir-7371-o17 Sha-Mir-7371-o18 Sha-Mir-7371-o19 Sha-Mir-7371-o20 Sha-Mir-7371-o24 Sha-Mir-7371-o25 Sha-Mir-7371-o26 Sha-Mir-7371-o27 Sha-Mir-7371-o28 Sha-Mir-7371-P11d Sha-Mir-7371-P11e Sha-Mir-7371-P12a Sha-Mir-7371-P12b Sha-Mir-7371-P13 Sha-Mir-7371-P15 Sha-Mir-7371-P17 Sha-Mir-7371-P18 Sha-Mir-7371-P19-v1 Sha-Mir-7371-P20 Sha-Mir-7371-P25 Sha-Mir-7371-P28a Sha-Mir-7371-P28b Sha-Mir-7371-P29 Sha-Mir-7371-P39

Orthologues

Mdo-Mir-7371-P1

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Marsupialia

Genome context
(DEVIL_add)

GL867598.1: 1401798-1401859 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7371-o1)

Mir-7262-P5 GL867598.1: 1359395-1359452 [-] UCSC Ensembl
Mir-7370 GL867598.1: 1366572-1366630 [-] UCSC Ensembl
Mir-7371-o1 GL867598.1: 1401798-1401859 [-] UCSC Ensembl
Mir-7371-o2 GL867598.1: 1403552-1403609 [-] UCSC Ensembl
Mir-7371-o3 GL867598.1: 1405296-1405356 [-] UCSC Ensembl
Mir-7371-o4-v1 GL867598.1: 1407246-1407303 [-] UCSC Ensembl
Mir-7371-o4-v2 GL867598.1: 1407246-1407304 [-] UCSC Ensembl

Seed

CCUUUGU

Precursor
(pre-Mir +30nt flank)

UCUACUCUCCUGACAUCUCCUUCACCAGCUUCCUUUGUACAAGAUGUUCUAUUGUGUAAAUACCAUCAAAGAGCAUAUUGUACAAAGGGUGUUGUUGGCAUGGUAUUAGCAUUCCAAACUGA

Get precursor sequence

Structure

        10         20          30        40        50          
UCUACUCUCCUGACAUCU-  U--|  C    U            G       AUUGUGUAA 
                   CC   UCA CAGC UCCUUUGUACAA AUGUUCU         \
                   GG   GGU GUUG GGGAAACAUGUU UACGAGA         A
AGUCAAACCUUACGAUUAU  UAC^  U    U            A       AACUACCAU 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-7371-o1_5p

mirBase accession

None

Sequence

0- UCCUUUGUACAAGAUGUUCUAU -22

Get sequence

Star sequence

Sha-Mir-7371-o1_3p*

mirBase accession

None

Sequence

39- AGAGCAUAUUGUACAAAGGGUGU -62

Get sequence