MirGeneDB ID | Sha-Mir-7371-o1 |
Family name |
MIR-7371 (all species) |
Seed |
CCUUUGU |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
Sha-Mir-7371-o2
Sha-Mir-7371-o3
Sha-Mir-7371-o4-v1
Sha-Mir-7371-o4-v2
Sha-Mir-7371-o5
Sha-Mir-7371-o6
Sha-Mir-7371-o7
Sha-Mir-7371-o8
Sha-Mir-7371-o9
Sha-Mir-7371-o10
Sha-Mir-7371-o11
Sha-Mir-7371-o12
Sha-Mir-7371-o13
Sha-Mir-7371-o14
Sha-Mir-7371-o15
Sha-Mir-7371-o16
Sha-Mir-7371-o17
Sha-Mir-7371-o18
Sha-Mir-7371-o19
Sha-Mir-7371-o20
Sha-Mir-7371-o21
Sha-Mir-7371-o22
Sha-Mir-7371-o23
Sha-Mir-7371-o24
Sha-Mir-7371-o25
Sha-Mir-7371-o26
Sha-Mir-7371-o27
Sha-Mir-7371-o28
Sha-Mir-7371-P13
Sha-Mir-7371-P39
|
Orthologues |
Mdo-Mir-7371-P1
|
Node of Origin (locus) |
S. harrisii
|
Node of Origin (family) |
Marsupialia
|
Genome context (DEVIL_add) |
GL867598.1: 1401798-1401859 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUACUCUCCUGACAUCUCCUUCACCAGCUUCCUUUGUACAAGAUGUUCUAUUGUGUAAAUACCAUCAAAGAGCAUAUUGUACAAAGGGUGUUGUUGGCAUGGUAUUAGCAUUCCAAACUGA
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUACUCUCCUGACAUCU- U--| C U G AUUGUGUAA
CC UCA CAGC UCCUUUGUACAA AUGUUCU \
GG GGU GUUG GGGAAACAUGUU UACGAGA A
AGUCAAACCUUACGAUUAU UAC^ U U A AACUACCAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Sha-Mir-7371-o1_5p |
mirBase accession | None |
Sequence |
0- UCCUUUGUACAAGAUGUUCUAU -22
Get sequence
|
Star sequence |
Sha-Mir-7371-o1_3p* |
mirBase accession | None |
Sequence |
39- AGAGCAUAUUGUACAAAGGGUGU -62
Get sequence
|