MirGeneDB 3.0

MirGeneDB ID

Sha-Mir-7262-P5

Family name MIR-7262 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-7262-P1  Sha-Mir-7262-P2  Sha-Mir-7262-P3  Sha-Mir-7262-P4  Sha-Mir-7262-P6  Sha-Mir-7262-P7 
Orthologues Mdo-Mir-7262-P5 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)
GL867598.1: 1359395-1359452 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7262-P5)
Mir-7262-P5 GL867598.1: 1359395-1359452 [-] UCSC Ensembl
Mir-7370 GL867598.1: 1366572-1366630 [-] UCSC Ensembl
Mir-7371-o1 GL867598.1: 1401798-1401859 [-] UCSC Ensembl
Mir-7371-o2 GL867598.1: 1403552-1403609 [-] UCSC Ensembl
Mir-7371-o3 GL867598.1: 1405296-1405356 [-] UCSC Ensembl
Mir-7371-o4-v1 GL867598.1: 1407246-1407303 [-] UCSC Ensembl
Mir-7371-o4-v2 GL867598.1: 1407246-1407304 [-] UCSC Ensembl
Seed AAAUGCA
Precursor
(pre-Mir +30nt flank)
UUCUGCCAGAUGUGACAGUACACGGUGUCCCGAAAGUCUUGAUGCAAUUUUAGCAAUUAAAGUGUAAAAAUGCACUAAGACUUUUAGGACACCCUGCACAUACAGUGUUCUGCAUCUG
Get precursor sequence
Structure
        10          20        30        40        50        
UUCUGCCAGAUGUGACA--| A  C       CG         A    A     GCAAU 
                   GU CA GGUGUCC  AAAGUCUUG UGCA UUUUA     U
                   CA GU CCACAGG  UUUCAGAAU ACGU AAAAU     A
GUCUACGUCUUGUGACAUA^ C  C       AU         C    A     GUGAA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-7262-P5_5p*

mirBase accessionNone
Sequence
0- CGAAAGUCUUGAUGCAAUUUUA -22
Get sequence
Mature sequence

Sha-Mir-7262-P5_3p

mirBase accessionNone
Sequence
36- AAAAUGCACUAAGACUUUUAGG -58
Get sequence