MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-7371-o4

Family name MIR-7371 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-7371-o1  Sha-Mir-7371-o2  Sha-Mir-7371-o3  Sha-Mir-7371-o4-v1  Sha-Mir-7371-o13  Sha-Mir-7371-o14  Sha-Mir-7371-o15  Sha-Mir-7371-o16  Sha-Mir-7371-o17  Sha-Mir-7371-o18  Sha-Mir-7371-o19  Sha-Mir-7371-o20  Sha-Mir-7371-o24  Sha-Mir-7371-o25  Sha-Mir-7371-o26  Sha-Mir-7371-o27  Sha-Mir-7371-o28  Sha-Mir-7371-P11d  Sha-Mir-7371-P11e  Sha-Mir-7371-P12a  Sha-Mir-7371-P12b  Sha-Mir-7371-P13  Sha-Mir-7371-P15  Sha-Mir-7371-P17  Sha-Mir-7371-P18  Sha-Mir-7371-P19-v1  Sha-Mir-7371-P20  Sha-Mir-7371-P25  Sha-Mir-7371-P28a  Sha-Mir-7371-P28b  Sha-Mir-7371-P29  Sha-Mir-7371-P39 
Orthologues Mdo-Mir-7371-P4 
Node of Origin (locus) S. harrisii
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)		 GL867598.1: 1407246-1407304 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7371-o4-v2)		 Mir-7262-P5 GL867598.1: 1359395-1359452 [-] UCSC Ensembl
Mir-7370 GL867598.1: 1366572-1366630 [-] UCSC Ensembl
Mir-7371-o1 GL867598.1: 1401798-1401859 [-] UCSC Ensembl
Mir-7371-o2 GL867598.1: 1403552-1403609 [-] UCSC Ensembl
Mir-7371-o3 GL867598.1: 1405296-1405356 [-] UCSC Ensembl
Mir-7371-o4-v1 GL867598.1: 1407246-1407303 [-] UCSC Ensembl
Mir-7371-o4-v2 GL867598.1: 1407246-1407304 [-] UCSC Ensembl
Variant

Sha-Mir-7371-o4-v2
Seed GAGCAUC
Precursor
(pre-Mir +30nt flank)		 
UCCAUUUUCUUGUUAUUUUCUCCACUUGCCCCCUUUGUACUAGAUACUUUGUUGUGUAAAUAUUAAAUAGAGCAUCUGGUACAAAGGAGGUAGUUGGGGCACAGCACUUCUUGAAGCAC
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Structure
        10         20        30        40        50         
UCCAUUUUCUUGUUAUUUU-|    C     C              A      UGUGUA 
                    CUCCA UUGCC CCUUUGUACUAGAU CUUUGU      A
                    GGGGU GAUGG GGAAACAUGGUCUA GAGAUA      A
CACGAAGUUCUUCACGACAC^    U     A              C      AAUUAU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-7371-o4-v2_5p*
mirBase accessionNone
Sequence 
0- CCCUUUGUACUAGAUACUUUGU -22
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Mature sequence

Sha-Mir-7371-o4-v2_3p
mirBase accessionNone
Sequence 
38- AGAGCAUCUGGUACAAAGGAG -59
Get sequence
Variant

Sha-Mir-7371-o4-v1
Seed AGAGCAU
Precursor
(pre-Mir +30nt flank)		 
CCAUUUUCUUGUUAUUUUCUCCACUUGCCCCCUUUGUACUAGAUACUUUGUUGUGUAAAUAUUAAAUAGAGCAUCUGGUACAAAGGAGGUAGUUGGGGCACAGCACUUCUUGAAGCAC
Get precursor sequence
Structure
        10          20        30        40        50        
CCAUUUUCUUGUUAUUUU--|    C     C              A       GUGUA 
                    CUCCA UUGCC CCUUUGUACUAGAU CUUUGUU     A
                    GGGGU GAUGG GGAAACAUGGUCUA GAGAUAA     A
CACGAAGUUCUUCACGACAC^    U     A              C       AUUAU 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-7371-o4-v1_5p*
mirBase accessionNone
Sequence 
0- CCUUUGUACUAGAUACUUUGUU -22
Get sequence
Mature sequence

Sha-Mir-7371-o4-v1_3p
mirBase accessionNone
Sequence 
36- UAGAGCAUCUGGUACAAAGGAG -58
Get sequence