| MirGeneDB ID | Sha-Novel-9 |
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| Family name |
SHA-NOVEL-9 (all species) |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. harrisii
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| Node of Origin (family) |
S. harrisii
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Genome context
(DEVIL_add) |
GL849587.1: 418445-418508 [-]
UCSC
Ensembl
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| Seed |
AGGAUAG |
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Precursor
(pre-Mir +30nt flank) |
AAUUUGCCAGCCCAACUCCCUUCUUCCUUCCUCUGUCCUCCAGCUGUCUUUUGAAUUCCAAAUUGUCAACUCAAGGAUAGUUGUAGGCAAGGGAAGGAGGACCUGGGACAGAGAUCAAAGUAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAUUUGCCAGCCCAACU- CU-| UC U C UGAAUUCCAA
CC UCUUCCUUCC UG CCU CAGCUGUCUUU \
GG AGGAGGAAGG AC GGA GUUGAUAGGAA A
CGAUGAAACUAGAGACAG UCC^ GA - U CUCAACUGUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | Derived for DasyuroDcRNAphia. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Star sequence |
Sha-Novel-9_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUCUGUCCUCCAGCUGUCUUUU -22
Get sequence
|
|---|
| Mature sequence |
Sha-Novel-9_3p |
| mirBase accession | None |
|---|
| Sequence |
42- AAGGAUAGUUGUAGGCAAGGGA -64
Get sequence
|
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