MirGeneDB 2.1

MirGeneDB ID

Sha-Novel-8

Family name SHA-NOVEL-8 (all species)
Seed ACGUGUG
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) S. harrisii
Genome context
(DEVIL_add)
GL841443.1: 413903-413960 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAAGCACUUUCUCAGUUGUGCAUGUGUAUAUGUGCAUGCAUAUAGGUACAUAUAUGCAUCUAUUUGCACGUGUGUGCAUGCAUAUGUACACGUGUACAGGCAGGAACUCCCAGGGCU
Get precursor sequence
Structure
        10          20        30        40        50        
GCAAGCACUUUCUCAGU--|                           G  A  UAUAUG 
                   UGUGCAUGUGUAUAUGUGCAUGCAUAUA GU CA      C
                   ACAUGUGCACAUGUAUACGUACGUGUGU CA GU      A
UCGGGACCCUCAAGGACGG^                           G  C  UUAUCU 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Novel-8_5p*

mirBase accessionNone
Sequence
0- AUGUGCAUGCAUAUAGGUACA -21
Get sequence
Mature sequence

Sha-Novel-8_3p

mirBase accessionNone
Sequence
37- CACGUGUGUGCAUGCAUAUGU -58
Get sequence