MirGeneDB 3.0

MirGeneDB ID

Sha-Novel-8

Family name SHA-NOVEL-8 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) S. harrisii
Genome context
(DEVIL_add)
GL834640.1: 1948343-1948402 [+] UCSC Ensembl
Seed UCAAAUC
Precursor
(pre-Mir +30nt flank)
UGGGCAGUGUCAUAGAGGGGUGUGACUGGGUUCAAAUCCUGGAGUUACUCCUUGUCAACAACAAUAAGGAGUAACUCUGAGAUUUGAACCUAGUCACACCCACCCCCCAAUGACACAGUG
Get precursor sequence
Structure
        10          20        30        40        50         
UGGGCAGUGUCAUAGAG--|                    CU            UGUCAA 
                   GGGUGUGACUGGGUUCAAAUC  GGAGUUACUCCU      C
                   CCCACACUGAUCCAAGUUUAG  UCUCAAUGAGGA      A
GUGACACAGUAACCCCCCA^                    AG            AUAACA 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentDerived for DasyuroDcRNAphia.
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Novel-8_5p

mirBase accessionNone
Sequence
0- UUCAAAUCCUGGAGUUACUCCU -22
Get sequence
Star sequence

Sha-Novel-8_3p*

mirBase accessionNone
Sequence
38- GAGUAACUCUGAGAUUUGAACC -60
Get sequence