| MirGeneDB ID | Sha-Novel-10-P2a |
|---|---|
| Family name | SHA-NOVEL-10 (all species) |
| Species | Tasmanian devil (Sarcophilus harrisii) |
| MiRBase ID | |
| Paralogues | Sha-Novel-10-P1a-v1 Sha-Novel-10-P1b-v1 Sha-Novel-10-P2b-v1 Sha-Novel-10-P3 Sha-Novel-10-P4 Sha-Novel-10-P5-v1 |
| Orthologues | |
| Node of Origin (locus) | S. harrisii |
| Node of Origin (family) | S. harrisii |
| Genome context (DEVIL_add) |
|
| Variant | Sha-Novel-10-P2a-v1 |
| Seed | GAGGUUU |
| Precursor (pre-Mir +30nt flank) |
UGAGGUUUGAGCUACUGGCUACUUAUUUCUCUUGGUAGCCAGCAGCCAAACCUUUAGGet precursor sequence |
| Structure | 10 20 U--| A A UAUU GAGGUUUG GCU CUGGCUACU U UUCCAAAC CGA GACCGAUGG C GAU^ - C UUCU 50 40 30 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Sha-Novel-10-P2a-v1_5p |
| mirBase accession | None |
| Sequence |
0- UGAGGUUUGAGCUACUGGCUACU -23
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|
| Star sequence | Sha-Novel-10-P2a-v1_3p* |
| mirBase accession | None |
| Sequence |
35- UAGCCAGCAGCCAAACCUUUAG -57
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|
| Variant | Sha-Novel-10-P2a-v2 |
| Seed | UGAGGUU |
| Precursor (pre-Mir +30nt flank) |
UUGAGGUUUGAGCUACUGGCUACUUAUUUCUCUUGGUAGCCAGCAGCCAAACCUUUAGUGet precursor sequence |
| Structure | 10 20 UU--| A A UAUU GAGGUUUG GCU CUGGCUACU U UUCCAAAC CGA GACCGAUGG C UGAU^ - C UUCU 50 40 30 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Sha-Novel-10-P2a-v2_5p |
| mirBase accession | None |
| Sequence |
0- UUGAGGUUUGAGCUACUGGCUACU -24
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|
| Star sequence | Sha-Novel-10-P2a-v2_3p* |
| mirBase accession | None |
| Sequence |
36- UAGCCAGCAGCCAAACCUUUAGU -59
Get sequence
|
