Mir-7373-o3

MirGeneDB ID

Sha-Mir-7373-o3

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-7373-o1 Sha-Mir-7373-o2 Sha-Mir-7373-o4 Sha-Mir-7373-o5 Sha-Mir-7373-o6 Sha-Mir-7373-o7 Sha-Mir-7373-o8a Sha-Mir-7373-o8b Sha-Mir-7373-o8c Sha-Mir-7373-o8d1 Sha-Mir-7373-o8d2 Sha-Mir-7373-o8e Sha-Mir-7373-o8f Sha-Mir-7373-o8g Sha-Mir-7373-o8h Sha-Mir-7373-o8i Sha-Mir-7373-o8j Sha-Mir-7373-o9a Sha-Mir-7373-o9b Sha-Mir-7373-o9c

Orthologues

Mdo-Mir-7373-P3 Neu-Mir-7373

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Marsupialia

Genome context
(DEVIL_add)

GL867601.1: 2091074-2091128 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7373-o3)

Mir-7373-o5 GL867601.1: 2074961-2075015 [-] UCSC Ensembl
Mir-7373-o1 GL867601.1: 2076373-2076427 [-] UCSC Ensembl
Mir-7373-o6 GL867601.1: 2080157-2080212 [-] UCSC Ensembl
Mir-7373-o9b GL867601.1: 2081002-2081059 [-] UCSC Ensembl
Mir-7373-o9a GL867601.1: 2081577-2081634 [-] UCSC Ensembl
Mir-7373-o4 GL867601.1: 2081864-2081918 [-] UCSC Ensembl
Mir-7373-o9c GL867601.1: 2082143-2082200 [-] UCSC Ensembl
Mir-7373-o8a GL867601.1: 2083689-2083746 [-] UCSC Ensembl
Mir-7373-o8b GL867601.1: 2083966-2084023 [-] UCSC Ensembl
Mir-7373-o8c GL867601.1: 2084243-2084300 [-] UCSC Ensembl
Mir-7373-o8d2 GL867601.1: 2084520-2084577 [-] UCSC Ensembl
Mir-7373-o8e GL867601.1: 2085084-2085141 [-] UCSC Ensembl
Mir-7373-o8d1 GL867601.1: 2085658-2085715 [-] UCSC Ensembl
Mir-7373-o8f GL867601.1: 2085945-2086002 [-] UCSC Ensembl
Mir-7373-o8g GL867601.1: 2086234-2086291 [-] UCSC Ensembl
Mir-7373-o8h GL867601.1: 2086519-2086576 [-] UCSC Ensembl
Mir-7373-o8i GL867601.1: 2086804-2086861 [-] UCSC Ensembl
Mir-7373-o8j GL867601.1: 2087091-2087148 [-] UCSC Ensembl
Mir-7373-o7 GL867601.1: 2089434-2089488 [-] UCSC Ensembl
Mir-7373-o2 GL867601.1: 2090784-2090838 [-] UCSC Ensembl
Mir-7373-o3 GL867601.1: 2091074-2091128 [-] UCSC Ensembl

Seed

AGGCACU

Precursor
(pre-Mir +30nt flank)

AAGAGGACGGACACUGAGAGAUGGUGAGACAAGCCCUUUUAUUAGUGAUUGGGAUAUUUUCCUCAGGCACUAAGAAAGGGUUUCUUUCUUCAUCUCAAAACGCAAAGCCAUUCAU

Get precursor sequence

Structure

        10          20        30        40        50       
AAGAGGACGGACACUGA--|      U    C          A      A     AUA 
                   GAGAUGG GAGA AAGCCCUUUU UUAGUG UUGGG   U
                   CUCUACU CUUU UUUGGGAAAG AAUCAC GACUC   U
UACUUACCGAAACGCAAAA^      U    C          -      G     CUU 
   110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-7373-o3_5p* (predicted)

mirBase accession

None

Sequence

0- AAGCCCUUUUAUUAGUGAUUGGG -23

Get sequence

Mature sequence

Sha-Mir-7373-o3_3p

mirBase accession

None

Sequence

33- CAGGCACUAAGAAAGGGUUUCU -55

Get sequence