Mir-7373-o4

MirGeneDB ID

Sha-Mir-7373-o4

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-7373-o1 Sha-Mir-7373-o2 Sha-Mir-7373-o3 Sha-Mir-7373-o5 Sha-Mir-7373-o6 Sha-Mir-7373-o7 Sha-Mir-7373-o8a Sha-Mir-7373-o8b Sha-Mir-7373-o8c Sha-Mir-7373-o8d1 Sha-Mir-7373-o8d2 Sha-Mir-7373-o8e Sha-Mir-7373-o8f Sha-Mir-7373-o8g Sha-Mir-7373-o8h Sha-Mir-7373-o8i Sha-Mir-7373-o8j Sha-Mir-7373-o9a Sha-Mir-7373-o9b Sha-Mir-7373-o9c

Orthologues

Mdo-Mir-7373-P4a Mdo-Mir-7373-P4b Neu-Mir-7373

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Marsupialia

Genome context
(DEVIL_add)

GL867601.1: 2081864-2081918 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7373-o4)

Mir-7373-o5 GL867601.1: 2074961-2075015 [-] UCSC Ensembl
Mir-7373-o1 GL867601.1: 2076373-2076427 [-] UCSC Ensembl
Mir-7373-o6 GL867601.1: 2080157-2080212 [-] UCSC Ensembl
Mir-7373-o9b GL867601.1: 2081002-2081059 [-] UCSC Ensembl
Mir-7373-o9a GL867601.1: 2081577-2081634 [-] UCSC Ensembl
Mir-7373-o4 GL867601.1: 2081864-2081918 [-] UCSC Ensembl
Mir-7373-o9c GL867601.1: 2082143-2082200 [-] UCSC Ensembl
Mir-7373-o8a GL867601.1: 2083689-2083746 [-] UCSC Ensembl
Mir-7373-o8b GL867601.1: 2083966-2084023 [-] UCSC Ensembl
Mir-7373-o8c GL867601.1: 2084243-2084300 [-] UCSC Ensembl
Mir-7373-o8d2 GL867601.1: 2084520-2084577 [-] UCSC Ensembl
Mir-7373-o8e GL867601.1: 2085084-2085141 [-] UCSC Ensembl
Mir-7373-o8d1 GL867601.1: 2085658-2085715 [-] UCSC Ensembl
Mir-7373-o8f GL867601.1: 2085945-2086002 [-] UCSC Ensembl
Mir-7373-o8g GL867601.1: 2086234-2086291 [-] UCSC Ensembl
Mir-7373-o8h GL867601.1: 2086519-2086576 [-] UCSC Ensembl
Mir-7373-o8i GL867601.1: 2086804-2086861 [-] UCSC Ensembl
Mir-7373-o8j GL867601.1: 2087091-2087148 [-] UCSC Ensembl
Mir-7373-o7 GL867601.1: 2089434-2089488 [-] UCSC Ensembl
Mir-7373-o2 GL867601.1: 2090784-2090838 [-] UCSC Ensembl
Mir-7373-o3 GL867601.1: 2091074-2091128 [-] UCSC Ensembl

Seed

AGCCCUU

Precursor
(pre-Mir +30nt flank)

GGAAAGGAGGUCCCACUGAGGUAGAGGGGCAAGCCCUUACCAUUUGGUCUGAUAGAUGUCACUCAGAUCAAACAGAAGGGACUGCUUCUUCAUCUCAUAGCACAACACCCUUCAG

Get precursor sequence

Structure

        10          20        30        40        50       
GGAAAGGAGGUCCCACU--|    AG       AG     ACCA          UAGA 
                   GAGGU  AGGGGCA  CCCUU    UUUGGUCUGA    U
                   CUCUA  UCUUCGU  GGGAA    AAACUAGACU    G
GACUUCCCACAACACGAUA^    CU       CA     GAC-          CACU 
   110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-7373-o4_5p

mirBase accession

None

Sequence

0- AAGCCCUUACCAUUUGGUCUGA -22

Get sequence

Star sequence

Sha-Mir-7373-o4_3p*

mirBase accession

None

Sequence

34- AGAUCAAACAGAAGGGACUGC -55

Get sequence