MirGeneDB 2.1

MirGeneDB ID

Sha-Mir-7373-o4

Family name MIR-7373 (all species)
Seed AGCCCUU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-7373-o1  Sha-Mir-7373-o2  Sha-Mir-7373-o3  Sha-Mir-7373-o5  Sha-Mir-7373-o6  Sha-Mir-7373-o7  Sha-Mir-7373-o8a  Sha-Mir-7373-o8b  Sha-Mir-7373-o8c  Sha-Mir-7373-o8d1  Sha-Mir-7373-o8d2  Sha-Mir-7373-o8e  Sha-Mir-7373-o8f  Sha-Mir-7373-o8g  Sha-Mir-7373-o8h  Sha-Mir-7373-o8i  Sha-Mir-7373-o8j  Sha-Mir-7373-o9a  Sha-Mir-7373-o9b  Sha-Mir-7373-o9c 
Orthologues Mdo-Mir-7373-P4a  Mdo-Mir-7373-P4b 
Node of Origin (locus) S. harrisii
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)
GL867601.1: 2081864-2081918 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAAAGGAGGUCCCACUGAGGUAGAGGGGCAAGCCCUUACCAUUUGGUCUGAUAGAUGUCACUCAGAUCAAACAGAAGGGACUGCUUCUUCAUCUCAUAGCACAACACCCUUCAG
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Structure
        10          20        30        40        50       
GGAAAGGAGGUCCCACU--|    AG       AG     ACCA          UAGA 
                   GAGGU  AGGGGCA  CCCUU    UUUGGUCUGA    U
                   CUCUA  UCUUCGU  GGGAA    AAACUAGACU    G
GACUUCCCACAACACGAUA^    CU       CA     GAC-          CACU 
   110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-7373-o4_5p

mirBase accessionNone
Sequence
0- AAGCCCUUACCAUUUGGUCUGA -22
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Star sequence

Sha-Mir-7373-o4_3p*

mirBase accessionNone
Sequence
34- AGAUCAAACAGAAGGGACUGC -55
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